Applied sciences

Bulletin of the Polish Academy of Sciences: Technical Sciences

Content

Bulletin of the Polish Academy of Sciences: Technical Sciences | 2018 | 66 | No 6 (Special Section on Deep Learning: Theory and Practice) |

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Abstract

The pathologists follow a systematic and partially manual process to obtain histological tissue sections from the biological tissue extracted from patients. This process is far from being perfect and can introduce some errors in the quality of the tissue sections (distortions, deformations, folds and tissue breaks). In this paper, we propose a deep learning (DL) method for the detection and segmentation of these damaged regions in whole slide images (WSIs). The proposed technique is based on convolutional neural networks (CNNs) and uses the U-net model to achieve the pixel-wise segmentation of these unwanted regions. The results obtained show that this technique yields satisfactory results and can be applied as a pre-processing step for automatic WSI analysis in order to prevent the use of the damaged areas in the evaluation processes.

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Authors and Affiliations

Z. Swiderska-Chadaj
T. Markiewicz
J. Gallego
G. Bueno
B. Grala
M. Lorent

Editorial office

Editorial Board 2020-2022

Editor-in-Chief:

M.P. Kazmierkowski, Warsaw University of Technology

Honorary (Past) Editor-in Chief:

T. Kaczorek, Warsaw University of Technology

Deputy Editor-in-Chief:

A. Rogalski, Division IV Technical Sciences PAN

B. Błachowski, Institute of Fundamental Technological Research PAN

Board of Topical Co-editors:

Artificial and Computational Intelligence

S. Osowski and B. Sawicki, Warsaw University of Technology

Biomedical Engineering and Biotechnology

A. Liebert, Institute of Biocybernetics and Biomedical Engineering PAN

Civil Engineering

L. Czarnecki, Building Research Institute, ITB, Warsaw

Control, Robotics and Informatics

J. Klamka and A. Babiarz, Silesian Technical University

A. Borkowski, Institute of Fundamental Technological Research PAN

Electronics, Telecommunication and Optoelectronics

M. Mrozowski and A. Lamęcki, Gdansk University of Technology

Mechanical and Aeronautical Engineering, Thermodynamics

B. Błachowski and P. Korczyk, Institute of Fundamental Technological Research PAN

A. Tylikowski, Lukasiewicz Research Network - Institute of Mechanised Construction and Rock Mining, Warsaw

Materials Science and Nanotechnology

B. Major and P. Czaja, Institute of Metallurgy and Materials Science PAN

Power Systems and Power Electronics

M.P. Kazmierkowski, Warsaw University of Technology

International Editorial Advisory Board

R. Asthana, University of Wisconsin-Stout, Menomonie, USA

Xu Binshi, China Association of Plant Engineering, Beijing, P.R. China

F. Blaabjerg, Aalborg University, Denmark

C. Cecati, University of L’Aquila, Italy

A. Cichocki, RIKEN Institute, Tokyo, Japan

M. David, National Polytechnique de Toulouse, France

R. Ebner, Materials Centre Leoben, Leoben, Austria

E. Fornasini, University of Padova, Padova, Italy

L.G. Franquelo, University of Sevilla, Spain

M. Gad-el-Hak, Virginia Commonwealth University, Richmond, USA

M. Giersig, Free University of Berlin, Germany

D. van Gemert, Catholic University Leuven, KU Leuven, Belgium

L. Keviczky, Hungarian Academy of Sciences, Budapest, Hungary

V. Kučera, Czech Technical University in Prague, Prague, Czech Republic

R. Kennel, Technical University Munich, Germany

T.A. Kowalewski, Institute of Fundamental Technological Research PAN

E. Levi, Liverpool John Moore University, UK

G. Maier, Technical University of Milan, Milan, Italy

K.F. Man, City University of Hong Kong,

R. Maniewski, Institute of Biocybernetics and Biomedical Engineering PAN

H.A. Mang, Austrian Academy of Sciences, Vienna, Austria

H. Mihashi, Tohoku University, Aoba-ku, Sendai, Japan

S. Mindess, University of British Columbia, Vancouver, Canada

D.A. Mlynski, University of Karlsruhe, Karlsruhe, Germany

A.S. Nowak, University of Michigan, Ann Arbor, USA

K. Ohnishi, Keio University, Yokohama, Japan

A. Öberg, Linköping University, Linköping, Sweden

W. Pedrycz, University of Alberta, Canada

S. Przemieniecki, University of South Florida, Tampa, USA

M. Razeghi, Northwestern University, Evanston, USA

J. Rodriguez, University of Andres Bello, Santiago, Chile

J.V. Sloten, Catholic University Leuven, Leuven, Belgium

B.M. Wilamowski, University of Auburn, Alabama, USA

W. Włosiński , Warsaw University of Technology, Warsaw, Poland

A.L. Yarin, University of Illinois at Chicago, USA

Du Xiangwan, Chinese Academy of Engineering, China

J. Żurada, Department of Computer Engineering, University of Louisville, USA

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Editorial Office:

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Wydział IV Nauk Technicznych PAN

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PL 00-901 Warszawa

Copy Editor:

Renata Podraza, e-mail: renata.podraza@pan.pl

Finance:

Ewa Trojanowska, ewa.trojanowska@pan.pl

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Bulletin of the Polish Academy of Sciences: Technical Sciences jest czasopismem wydawanym w wolnym dostępie na licencji CC BY-NC-ND 4.0.

Bulletin of the Polish Academy of Sciences: Technical Sciences is an open access journal with all content available with no charge in full text version. The journal content is available under the licencse CC BY-NC-ND 4.0.

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