Title

Prevalence and phylogenetic analysis of Fig mosaic virus and Fig badnavirus-1 in Iran

Journal title

Journal of Plant Protection Research

Yearbook

2016

Volume

vol. 56

Numer

No 2

Authors

Mohammadreza Alimoradian ; Farshad Rakhshandehroo ; Masoud Shams-bakhsh

Divisions of PAS

Nauki Biologiczne i Rolnicze

Publisher

Committee of Plant Protection PAS ; Institute of Plant Protection – National Research Institute

Date

2016

Identifier

eISSN 1899–007X ; ISSN 1427–4345

References

Pearson (1988), Improved tools for biological sequence comparison Proceedings of the National Academy of, Sciences USA, 8, 85. ; Liu (2012), Evolutionary force of AT - richrepeats to trap genomic and episomal DNAs into the rice genome : lessons fromendogenous pararetrovirus, Plant Journal, 72. ; Shahmirzaie (2012), Current status of fig mosaic disease in Iran, Journal of Phytopathology, 8, 160. ; Nouri (2014), Detection and molecular variability of Fig fleck - associated virus and Fig cryptic virus in Iran, Journal of Phytopathology, 7, 162. ; Hearon (1984), Graft pollen and seed transmission of an agent associated with top spotting in Kalancöe blossfeldiana, Phytopathology, 74, 347. ; Gayral (2008), A single banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus, Journal of Virology, 13, 82. ; Elbeaino (2011), a Complete sequence of Fig fleck - associated virus , a novel member of the family Tymoviridae, Virus Research, 161. ; Dellaporta (1983), A plant DNA minipreparation : version II, Plant Molecular Biology Reporter, 1. ; Iskra (2014), A possible scenario for the evolution of Banana streak virus in banana, Virus Research, 86. ; Walia (2014), Genetic variation and possible mechanisms driving the evolution of worldwide Fig mosaic virus isolates, Phytopathology, 104, 108, doi.org/10.1094/PHYTO-05-13-0145-R ; Dallot (2001), Evidence that the proliferation stage of micropropagation procedure is determinant in the expression of Banana streak virus integrated into the genome of the FHIA hybrid Archive of, Virology, 21, 146. ; Altschul (1997), Gapped BLAST and PSIBLAST : a new generation of protein database search programs, Nucleic Acids Research, 25, 3389, doi.org/10.1093/nar/25.17.3389 ; Foissac (2001), Polyvalent detection of fruit tree tricho , capillo and foveavirus by nested RT - PCR using degenerated and inosine containing primers, Acta Horticulturae, 550. ; Oluwafemi (2008), Search for variability among masterviruses showing symptoms of Maize streak virus from different regions of Nigeria by polymerase chain reactions Journal of Plant Protection, Research, 48, 529. ; Norozian (2014), Presence of Fig leaf mottle associated virus in an Iranian fig orchard, Journal of Plant Pathology, 96, 113. ; Pamilo (1993), Evolution of the Z fx and Z fy genes : rates and interdependence between the genes, Molecular Biology and Evolution, 10, 271. ; Danesh (2014), Prevalence and genetic diversity of fig mosaic virus isolates infecting fig tree in Iran, Acta Virologica, 58, 245, doi.org/10.4149/av_2014_03_245 ; Grenfell (2004), Unifying the epidemiological and evolutionary dynamics of pathogens, Science, 303. ; Bouhida (1993), An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice, Journal of General Virology, 74, 15, doi.org/10.1099/0022-1317-74-1-15 ; Elci (2012), Molecular detection and comparative sequence analysis of viruses infecting fig trees in Turkey, Journal of Phytopathology, 160. ; Martelli (2011), Fig mosaic disease and associated pathogens In : Virus and Virus - like Diseases of Pome and Stone Fruits eds APS Press , St, USA, 281. ; Chabannes (2013), Endogenous pararetroviruses a reservoir of virus infection in plants Current Opinion in, Virology, 3, 615. ; Saitou (1987), The neighbor - joining method : A new method for reconstructing phylogenetic trees, Molecular Biology and Evolution, 4, 406. ; Elbeshehy (2011), Viruses infecting figs in Egypt, Phytopathologia Mediterranea, 50, 327. ; Walia (2009), Partial sequence and survey analysis identify a multipartite , negative - sense RNA virus associated with fig mosaic, Plant Disease, 93, 4, doi.org/10.1094/PDIS-93-1-0004 ; Meyer (2008), Transmission of activated - episomal Banana streak OL ( badna ) virus BSOLV to cv Williams banana ( Musa sp ) by three mealybugs species, Plant Disease, 92, 1158, doi.org/10.1094/PDIS-92-8-1158 ; Martin (1987), A new type of virus causing striped chlorosis of mimosa, Phytopathology, 7, 77. ; Staginnus (2009), Suggestions for a nomenclature of endogenous pararetroviral sequences in plants Archive of, Virology, 7, 154. ; Acosta (2011), Advances in plant virus evolution : translating evolutionary insights into better disease management, Phytopathology, 101, 1136, doi.org/10.1094/PHYTO-01-11-0017 ; Flock (1955), Transmission of fig mosaic by the eriophyid mite Aceria ficus, Phytopathology, 45, 52. ; Tajima (1989), Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, 123. ; Condit (1933), A mosaic of the fig in California, Phytopathology, 23, 887. ; Minafra (2012), Occurrence of Fig badnavirus in fig trees from different countries and symptomless seedlings, Journal of Plant Pathology, 94, 105. ; Elbeaino (2011), The complete nucleotide sequence and genome organization of Fig cryptic virus , a novel bipartite dsRNA virus infecting fig , widely distributed in the Mediterranean basin, Virus Genes, 42, 415, doi.org/10.1007/s11262-011-0581-0 ; Elbeaino (2011), Survey of fig viruses in the Canary Islands, Journal of Plant Pathology, 93, 737. ; Laney (2012), An integrated badnavirus is prevalent in fig germplasm, Phytopathology, 102, 1182, doi.org/10.1094/PHYTO-12-11-0351 ; Medberry (1990), Properties of Commelina yellow mottle virus complete DNA sequence , genomic discontinuities and transcript suggest that it is a pararetrovirus, Nucleic Acids Research, 18, 5505, doi.org/10.1093/nar/18.18.5505 ; Elbeaino (2012), Viruses and hop stunt viroid of fig trees in Syria, Journal of Plant Pathology, 94, 687.

DOI

10.1515/jppr-2016-0019