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Number of results: 10
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Abstract

Scientists no longer have to have the objects they study within arm's reach. Using the Internet and sophisticated equipment, researchers in Poland have - for the first time ever - remotely investigated the structure of protein crystals mounted at the synchrotron center in Grenoble, all without leaving their own lab in Poznań.
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Authors and Affiliations

Mariusz Jaskólski
Mirosław Gilski
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Abstract

Structural biology is concerned with the three-dimensional atomic structure of the molecules of life, proteins and nucleic acids. It was born in mid-1950s with a visionary application of X-ray diffraction to structure determination of protein crystals, and for several decades “structural biology” and “protein crystallography” were synonymous. In the 1980s structural biology received new experimental support from NMR spectroscopy, but a true breakthrough occurred only recently, with the development of atomic-resolution cryo-electron microscopy (cryo- EM), enabling direct visualization of macromolecular objects without the need of growing crystals. The Protein Data Bank (PDB) was created in 1971 with merely seven protein structures known. In mid-1990s the PDB entered an explosive growth phase, ignited by advances of biotechnological methods of protein production and, even more importantly, by widespread use of synchrotrons as extremely powerful X-ray sources. The technological advances did not stop there, and today we have on offer ever more powerful X-ray Free Electron Lasers (XFELs), producing astronomically bright femtosecond X-ray pulses, which allow studying the structure of nanometer-sized crystals or even of single macromolecules. Thanks to all those methodological developments, the PDB holds today over 210,000 experimental macromolecular structures, many of which (such as those related to HIV or SARS-CoV-2) have fundamental importance for medicine as targets for rational drug design. In addition to innovative experimental methodology, structural biology has recently seen a huge progress of artificial intelligence (AI)-based methods of protein structure prediction, capable now of quite accurate divination of the three-dimensional structure for billions of protein sequences in very short time. However, those machine-learning algorithms, such as AlphaFold, recognize patterns that have been seen before, while for truly new sequences and for oligomeric proteins the prediction is still less than certain and needs experimental validation. It appears then that experimental structural biology is not quite dead yet and will remain the main source of reliable novel structural information for the foreseeable future.
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Authors and Affiliations

Mariusz Jaskólski
1 2
ORCID: ORCID

  1. Zakład Krystalografii, Wydział Chemii, Uniwersytet im. Adama Mickiewicza w Poznaniu
  2. Instytut Chemii Bioorganicznej PAN w Poznaniu
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Abstract

Badany obiekt nie musi dziś znajdować się w zasięgu rąk badacza. Pośrednictwo Internetu i precyzyjna aparatura pomiarowa umożliwiły pierwsze w Polsce badania struktury kryształów białka zanurzonych w ciekłym azocie w Grenoble bez opuszczenia pracowni w Poznaniu.
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Authors and Affiliations

Mariusz Jaskólski
ORCID: ORCID
Mirosław Gilski
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Abstract

The iconic discovery in 1912 of X-ray diffraction by crystals has revolutionized physics, chemistry, biology, and ultimately also life sciences, by providing a powerful method for structural characterization of drugs and drug targets used in molecular medicine. The first X-ray diffraction was recorded by an assistant (Walter Friedrich) and PhD student (Paul Knipping) under the instruction of a theoretician Max (later von) Laue, who two years later was the sole recipient of a Nobel Prize (with the award ceremony in 1920) awarded for this discovery. The experimental setup, now on display in Deutsches Museum München, is labeled “the original Laue apparatus”, which is doubly incorrect: Laue himself never experimented with it, and it has a number of reconstructed parts due to loss, or even theft in the Museum itself. Also, the “first X-ray diffraction photograph” is enshrouded in a mist of ambiguity. Laue’s Nobel medal was deliberately dissolved in aqua regia to evade identification and confiscation by the Nazis. A replica was minted but it has been lost without a trace. The distorted (embellished) account of this fundamental discovery makes one wonder: is it acceptable to repeat narrations about scientific achievements with some departure from the historical truth? We answer “reluctantly yes”, with the caveat that all possible effort should be expended to rectify the picture. And this article is trying to achieve exactly this, with respect to one discovery in physics.
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Authors and Affiliations

Kamil F. Dziubek
1
Mariusz Jaskólski
2 3
ORCID: ORCID
Andrzej B. Więckowski
4 5

  1. Europejskie Laboratorium Spektroskopii Nieliniowej LENS, Sesto Fiorentino (Florencja), Włochy
  2. Instytut Chemii Bioorganicznej PAN
  3. Wydział Chemii, Uniwersytet im. Adama Mickiewicza w Poznaniu
  4. Wydział Fizyki i Astronomii, Uniwersytet Zielonogórski, Zielona Góra
  5. Instytut Fizyki Molekularnej PAN, Poznań

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