The role of catalase in resistance to boron toxicity after melatonin application (MEL) was investigated in Arabidopsis thaliana plants. Col-0 and cat2-2 plants were exposed to 50 μM MEL followed by boron toxicity (BT) in a medium containing 10 mM H ₃BO ₃. Pigment loss and accordingly chlorosis were reduced by melatonin under BT conditions, while they were more prominent in cat2-2 mutants. Moreover, TBARS and H ₂O ₂ contents, which increased due to BT, decreased as a result of melatonin application and the levels of these parameters in cat2-2 mutants were higher than the values in Col-0. Antioxidant enzyme activity of SOD and SOD1 gen transcript were induced by MEL under BT. Conversely, APX4, PER10 and CAT1 transcripts were down-regulated by MEL under BT. In addition, antioxidant enzyme activities and their transcript levels were lower than those of Col-0. Thus, we suggested that MEL scavenged ROS directly under BT. Melatonin also reduced the accumulation of boric acid in leaf tissues of Col-0, but not cat2-2. Finally, even though melatonin application provided a degree of endurance, the cat2 mutation resulted in increased sensitivity to BT.