The working environment and objects of agricultural machinery are different from those of automobiles, andagricultural machinery is greatly affected by the working environment and working conditions, and the power output systemismore complex. Agricultural machinery not only has drive output, but also PTO output and hydraulic output, whichtogetherconstitute the output system of agricultural machinery. Agricultural machinery conditions can be dividedintoroadtransportation working conditions and field operation working conditions. The working conditions of agricultural machinerycan be divided into different load conditions according to the different traction tools and whether the hydraulic andPTOwork,such as ploughing, rotary tillage, fertilization, and transportation. Therefore, developing hybrid electric agricultural machinerysystems that are suitable for various complex working conditions holds great theoretical significance and practical value. Giventhe complex working conditions of agricultural machinery systems in agricultural work and the intricate challengesindesigning hybrid agricultural machinery systems. In this paper, the two-dimensional matrix is used to represent thephysicalstructure and dynamics of the multi-channel power output agricultural mechanism. A hierarchical two-dimensional matrixmethod for the generation and screening of hybrid electric agricultural machinery systems with multi-power output powerisproposed. The components of agricultural machinery are divided into an input layer and an output layer, and these componentsare coded and defined, and then transformed into a matrix. The hierarchical two-dimensional matrix method is usedtogenerateand screen the hybrid electric agricultural mechanism type. Through the stratification of the matrix, the complexityoftheconfiguration generation is reduced, and the constraints are applied to the basic screening of the generated configurations. Therationality of the configurations obtained after generation and screening is verified by Simulink simulation. The resultsshowthat the configuration screened by this method can meet the performance requirements of agricultural machinery.