Abzazou, T., Salvadó, H., Cárdenas-Youngs, Y., Becerril-Rodríguez, A., Cebirán, E. M. C., Huguet, A. & Araujo, R. M. (2018). Characterization of nutrient-removing microbial communities in two full-scale WWTP systems using a new qPCR approach. Sci. Total Environ. , 618, pp. 858–865, DOI: 10.1016/j.scitotenv.2017.08.241
Banach, A., Pudlo, A. & Ziembińska-Buczyńska, A. (2018). Immobilization of Anammox biomass in sodium alginate. In E3S Web of Conferences (Vol. 44, pp. 00008). EDP Sciences, DOI: 10.1051/e3sconf/20184400008
Banach-Wiśniewska, A., Ćwiertniewicz-Wojciechowska, M.& Ziembińska-Buczyńska, A. (2020a). Effect of temperature shifts and anammox biomass immobilization on sequencing batch reactor performance and bacterial genes abundance. J. Environ., 1-12, DOI: 10.1007/s13762-020-02957-w
Banach-Wiśniewska, A., Tomaszewski, M., Cema, G. & Ziembińska-Buczyńska, A. (2020). Medium shift influence on nitrogen removal bacteria: Ecophysiology and anammox process performance. Chemosphere, 238, 124597, DOI: 10.1016/j.chemosphere.2019.124597
Barnes, M. A. & Turner, C. R. (2016). The ecology of environmental DNA and implications for conservation genetics. Conserv. Genet. , 17(1), pp. 1-17, DOI: 10.1007/s10592-015-0775-4
Calli, B., Mertoglu, B., Roest, K.& Inanc, B. (2006). Comparison of long-term performances and final microbial compositions of anaerobic reactors treating landfill leachate. Bioresour. Technol. , 97(4), pp. 641-647, DOI: 10.1016/j.biortech.2005.03.021
Conley, D. J., Paerl, H. W., Howarth, R. W., Boesch, D. F., Seitzinger, S. P., Havens, K. E. & Likens, G. E. (2009). Controlling eutrophication: nitrogen and phosphorus, Science pp. 1014-1015, DOI: 10.1126/science.1167755
Dodds, W.S. & Smith, V.H. (2016). Nitrogen, phosphorus and eutrophication in stream. Island Waters, 6:2, 155-162, DOI: 10.5268/IW-6.2.909
Ding, C., Adrian, L., Peng, Y. & He, J. (2020). 16S rRNA gene-based primer pair showed high specificity and quantification accuracy in detecting freshwater Brocadiales anammox bacteria. FEMS Microbiol. Ecol. , 96(3), DOI: 10.1093/femsec/fiaa013
Gerbl, F.W., Weidler, G. W., Wanek, W., Erhardt, A. & Stan-Lotter, H. (2014). Thaumarchaeal ammonium oxidation and evidence for a nitrogen cycle in a subsurface radioactive thermal spring in the Austrian Central Alps. Front. Microbiol. , 5, 225, DOI: 10.3389/fmicb.2014.00225
Gilbert, E. M., Agrawal, S., Schwartz, T., Horn, H. & Lackner, S. (2015). Comparing different reactor configurations for Partial Nitritation/Anammox at low temperatures. Water Res. , 81, 92-100. DOI: 10.1016/j.watres.2015.05.022
Härtig, E., & Zumft, W.G. (1999). Kinetics of nirS expression (cytochrome cd1 nitrite reductase) in Pseudomonas stutzeri during the transition from aerobic respiration to denitrification: evidence for a denitrification-specific nitrate- and nitrite-responsive regulatory system. J. Bacteriol. , 181, pp. 161–166, DOI: 10.1128/JB.181.1.161-166.1999
Jiang, R., Wang, J. G., Zhu, T., Zou, B., Wang, D. Q., Rhee, S. K. & Quan, Z. X. (2020). Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira. Appl. Environmen. Microbiol. , 86(20). DOI: 10.1128/AEM.01775-20
Kim, Y.M., Lee, D. S., Park, C., Park, D. & Park, J. M. (2011). Effects of free cyanide on microbial communities and biological carbon and nitrogen removal performance in the industrial sludge process. Water Res. , 45, pp. 1267-1279, DOI: 10.1016/j.watres.2010.10.003
Li, X., Xiao, Y. P., Ren, W. W., Liu, Z. F., Shi, J. H. & Quan, Z. X. (2012). Abundance and composition of ammonia-oxidizing bacteria and archaea in different types of soil in the Yangtze River estuary. J Zhejiang Univ-Sci B (Biomed Biotechnol) ,13, pp. 769-782, DOI: 10.1631/jzus.B1200013
Lindeman, S., Zarnoch, C. B., Castignetti, D. & Hoellein, T. J. (2016). Effect of eastern oysters (Crassostrea virginica) and seasonality on nitrite reductase gene abundance (nirS, nirK, nrfA) in an urban estuary. Estuaries and Coasts, 39(1), 218-232. DOI: 10.1007/s12237-015-9989-4
Livak, K.J. & Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods, 23, pp. 402-408, DOI: 10.1006/meth.2001.1262
Regier, N. & Frey, B. (2010). Experimental comparison of relative RT-qPCR quantification approaches for gene expression studies in poplar. BMC Mol. Biol. , 11(1), 57, DOI: 10.1186/1471-2199-11-57
Schmid, M., Twachtmann, U., Klein, M., Strous, M., Juretschko, S., Jetten, M., Metzger, J., Schleifer, K.H. & Wagner, M. (2000). Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Sys. Appl. Microbiol. , 23, 93–106, DOI: 10.1016/S0723-2020(00)80050-8
Sharma, R., Ranjan, R., Kapardar, R. K. & Grover, A. (2005). 'Unculturable' bacterial diversity: An untapped resource. Current Sci. , pp. 72-77,
Smith, C. J., McKew, B. A., Coggan, A. & Whitby, C. (2015). Primers: functional genes for nitrogen-cycling microbes in oil reservoirs. In Hydrocarbon and Lipid Microbiol. Protocols, pp. 207-241, DOI: 10.1007/8623_2015_184
Stewart, E. J. (2012). Growing unculturable bacteria. J. Bacteriol. , 194(16), pp. 4151-4160, DOI: 10.1128/JB.00345-12
Tekile A., Kim I. & Kim J. (2015). Mini-reveiw on rover eutrophication and bottom improvement techniques with special emphasis on the Nakdong River. J Environ. Sci. , 30, pp. 113-121, DOI: 10.1016/j.jes.2014.10.014
Tomaszewski, A., Cema, G., Ciesielski, S., Łukowiec, D. & Ziembińska-Buczyńska, A. (2019). Cold anammox process and reduced graphene oxide - varieties of effects during long-term interaction. Water Res. , 156, pp. 71-81, DOI: 10.1016/j.watres.2019.03.006
Wallenstein, M. D., Myrold, D. D., Firestone, M. & Voytek, M. (2006). Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecol. Appl. , 16, (6), pp. 2143-2152, DOI: 10.1890/1051-0761(2006)016[2143:ECODCA]2.0.CO;2
Wang, D., Wang, G., Zhang, G., Xu, X. & Yang, F. (2013). Using graphene oxide to enhance the activity of anammox bacteria for nitrogen removal. Bioresour. Technol. , 131, 527-530, DOI: 10.1016/j.biortech.2013.01.099
Wang, Y., Wang, H., Zhang, J., Yao, L. & Wei, Y. (2016). Deciphering the evolution of the functional genes and microbial community of the combined partial nitritation-anammox process with nitrate build-up and its in situ restoration. RSC Advances, 6(113), pp. 111702-111712, DOI: 10.1039/c6ra23865c
Wang, G., Xu, X., Zhou, L., Wang, C. & Yang, F. (2017). A pilot-scale study on the start-up of partial nitrification-anammox process for anaerobic sludge digester liquor treatment. Bioresour. Technol. , 241, pp. 181–189, DOI: 10.1016/j.biortech.2017.02.125
Wang, Q., He, J. (2020). Newly designed high-coverage degenerate primers for nitrogen removal mechanism analysis in a partial nitrification-anammox (PN/A) pro-cess. FEMS Microbiol. Ecol. , 96(1), DOI: 10.1093/femsec/fiz202
Whang, L. M., Chien, I. C., Yuan, S. L. & Wu, Y. J. (2009). Nitrifying community structures and nitrification performance of full-scale municipal and swine wastewater treatment plants. Chemosphere, 75(2), pp. 234-242, DOI: 10.1016/j.chemosphere.2008.11.059
Winkler, M. K., Bassin, J. P., Kleerebezem, R., Sorokin, D. Y. & van Loosdrecht, M. C. (2012). Unravelling the reasons for disproportion in the ratio of AOB and NOB in aerobic granular sludge. Applied Microbiol. Biotechnol. , 94(6), pp. 1657-1666, DOI: 10.1007/s00253-012-4126-9
Yang, Y. D., Hu, Y. G., Wang, Z. M. & Zeng, Z. H. (2018). Variations of the nirS-, nirK-, and nosZ-denitrifying bacterial communities in a northern Chinese soil as affected by different long-term irrigation regimes. Sci. Pollut. , 25(14), pp. 14057-14067, DOI: 10.1007/s11356-018-1548-7
Yao, Q. & Peng, D. C. (2017). Nitrite oxidizing bacteria (NOB) dominating in nitrifying community in full-scale biological nutrient removal wastewater treatment plants. AMB Express, 7(1), 25, DOI: 10.1186/s13568-017-0328-y
Yoshida, M., Ishii, S., Fujii, D., Otsuka, S. & Senoo., (2012). Identification of Active Denitrifiers in Rice Paddy Soil by DNA- and RNA-Based Analyses. Microbes Environ., 27, 4, pp. 456–461, DOI: 10.1264/jsme2.ME12076
Zahedi, A., Greay, T. L., Paparini, A., Linge, K. L., Joll, C. A. & Ryan, U. M. (2019). Identification of eukaryotic microorganisms with 18S rRNA next-generation sequenc-ing in wastewater treatment plants, with a more targeted NGS approach required for Cryptosporidium detection. Water Res., 158, pp. 301-312, DOI: 10.1016/j.watres.2019.04.041
Zhang X., Zheng S., Xiao X., Wang L. & Yin Y. (2017) Simultaneous nitrification/denitrification and stable sludge/water separation achieved in a conventional activated sludge process with severe filamentous bulking. Bioresour. Technol., 226, pp. 267-271, DOI: 10.1016/j.biortech.2016.12.047
Zhang, Y., Ruan, X. & Shi, W. (2019). Changes in the nitrogen biogeochemical cycle in sediments of an urban river under different dissolved oxygen levels. Water Supply, 19(4), pp. 1271-1278, DOI: 10.2166/ws.2018.188
Ziembińska-Buczyńska, A., Banach, A., Bacza, T. & Pieczykolan, M. (2014). Diversity and variability of methanogens during the shift from mesophilic to thermohilic conditions while biogas production. World J. Microbiol. Biotechnol., 30(12), pp. 3047-3053, DOI: 10.1007/s11274-014-1731-z
Ziembińska-Buczyńska, A., Banach-Wiśniewska, A., Tomaszewski, M., Poprawa, I., Student, S. & Cema, G. (2019). Ecophysiology and dynamics of nitrogen removal bacteria in a sequencing batch reactor during wastewater treatment start-up. Int. J. Environ., 16(8), pp. 4215-4222, DOI: 10.1007/s13762-019-02275-w