A nucleopolyhedrovirus isolated from the beet armyworm Spodoptera exigua (Polish laboratory culture), SeMNPV (P), morphologically similar to the viral bioinsecticide virus Spod-XR, was characterized molecularly and biologically. Phylogenetic analysis based on three conserved baculovirus genes, polh, lef-8 and pif-2, showed the highest homology of SeMNPV (P) to Mamestra brassicae (Mb) MNPV and M. configurata (Maco) MNPV, and much less to SeMNPV (Spod-XR). These findings were confirmed by genomic DNA restriction profile analyses. Bioassays revealed that SeMNPV isolated from the commercial bioinsecticide Spod-X^R was themost infectious for S. exigua, while the infectivity of SeMNPV (P) and MbMNPV was significantly lower. These data suggest that SeMNPV (P) is a variant of MbMNPV.

This paper presents the current stage of the development of EA-MOSGWA – a tool for identifying causal genes in Genome Wide Association Studies (GWAS). The main goal of GWAS is to identify chromosomal regions which are associated with a particular disease (e.g. diabetes, cancer) or with some quantitative trait (e.g height or blood pressure). To this end hundreds of thousands of Single Nucleotide Polymorphisms (SNP) are genotyped. One is then interested to identify as many SNPs as possible which are associated with the trait in question, while at the same time minimizing the number of false detections.

The software package MOSGWA allows to detect SNPs via variable selection using the criterion mBIC2, a modified version of the Schwarz Bayesian Information Criterion. MOSGWA tries to minimize mBIC2 using some stepwise selection methods, whereas EA-MOSGWA applies some advanced evolutionary algorithms to achieve the same goal. We present results from an extensive simulation study where we compare the performance of EA-MOSGWA when using different parameter settings. We also consider using a clustering procedure to relax the multiple testing correction in mBIC2. Finally we compare results from EA-MOSGWA with the original stepwise search from MOSGWA, and show that the newly proposed algorithm has good properties in terms of minimizing the mBIC2 criterion, as well as in minimizing the misclassification rate of detected SNPs.

Conservation of genetic resources by semen cryopreservation is essential for biodiversity conservation and storage of rare poultry breeds. Despite the widespread use of this method not all individuals presentia similar capacity for semen to be used after defrosting. The aim of the current study was to identify SNP markers and linked candidate genes potentially associated with rooster (Gallus gallus) sperm motility after cryopreservation. Genome-wide association studies were performed using 33 roosters from four breeds genotyped using Illumina Chicken 60K SNP BeadChip Calculations were performed using PLINK and EMMAX software. Significant SNP associations rs15557972 (p<1.36E-07) on chromosome 10 in the LOXL1 gene and rs15751385 (p<6.10E-06) on chromosome 6 in the intron of the ENSGALG00000052127 gene were identified. These findings associated with sperm motility SNPs will help to develop strategies for the selection of valuable individuals and the efficient conservation of the gene pool.

The root-knot nematode Meloidogyne graminicola is an economically important pest in rice production. The identification of a nematode species is an important basis in nematode management to reduce yield losses by extracting nematode DNA as an early step in molecular identification. This study aimed to investigate the optimal extraction method and number of M. graminicola for nematode genomic analysis based on PCR (polymerase chain reaction) and Sanger sequencing. The DNA extraction methods used in this study were the CTAB, SDS, and commercial kit (GeneAidTM Tissue/Blood DNA Mini Kit). The results revealed that the three DNA extraction methods could be used to analyze the nematode genomics based on PCR and Sanger sequencing using one nematode, both in a second-stage juvenile and a female, equipped with the process of nematode destruction by freezing. This finding was shown by the amplification of all DNA templates with Mg-F3 and Mg-R2 primers through PCR with a size of 370 bp, while Sanger sequencing obtained 372 bp.

The field of plant pathology has adopted targeted genome editing technology as one of its most crucial and effective genetic tools. Due to its simplicity, effectiveness, versatility, CRISPR together with CRISPR-associated proteins found in an adaptive immune system of prokaryotes have recently attracted the interest of the scientific world. Plant disease resistance must be genetically improved for sustainable agriculture. Plant biology and biotechnology have been transformed by genome editing, which makes it possible to perform precise and targeted genome modifications. Editing offers a fresh approach by genetically enhancing plant disease resistance and quickening resistance through breeding. It is simpler to plan and implement, has a greater success rate, is more adaptable and less expensive than other genome editing methods. Importantly CRISPR/Cas9 has recently surpassed plant science as well as plant disease. After years of research, scientists are currently modifying and rewriting genomes to create crop plants which are immune to particular pests and diseases. The main topics of this review are current developments in plant protection using CRISPR/Cas9 technology in model plants and commodities in response to viral, fungal, and bacterial infections, as well as potential applications and difficulties of numerous promising CRISPR/Cas9-adapted approaches.

Animals as a source of organs and tissues for xenotransplantation could become a backup solution for the growing shortage of human donors. The presence of human xenoreactive anti- bodies directed against Galα1,3Gal antigens on the cell surface of a pig donor triggers the activa- tion of the complement leading to a hyperacute reaction. The development of genetic engineer- ing techniques has enabled the modification of genomes by knocking in and/or knocking out genes. In this paper, we report the generation of modified pigs with ZFN mediated disruption of the GGTA1 gene encoding the enzyme responsible for synthesis of Galα1,3Gal antigens. ZFN plasmids designed to target the exon 9 region of the pig GGTA1 gene encoding the catalytic domain were injected into the pronuclei of fertilized egg cells. Among 107 piglets of the F0 gene- ration analyzed, one female with 9-nt deletion in exon 9 of the GGTA1 gene was found. 13 of 33 piglets of the F1 generation represented the +/- GGTA1 genotype and 2 of 13 F2 piglets repre- sented the -/- GGTA1 genotype. No changes in the animals’ behavior, phenotype or karyotype were observed. Analysis confirmed heredity of the trait in all animals. A complex functional analysis of the modified animals, including flow cytometry, human serum cytotoxicity test and immunohistochemical detection, was performed to estimate the phenotype effect of genetic modification and this indicated an efficient GGTA1 knock-out in modified pigs.

Article published in Science, 2012 by Jennifer A. Doudna, Emmanuelle Charpentier and their team presented a novel tool named as CRISPR/Cas9. The original CRISPR/Cas9 tool and the whole system developed from it since then allow making precise changes in the nucleotide sequence in the defined locus of the genome. The article presents the already known as well the potential future applications of the system for improvement of cultivated plants. The separate section is devoted to present the background of the Court of Justice decision C-528/16. Discussed are the far reaching negative consequences of this, based not on the merit decision, for the future of European green biotechnology.