Szczegóły

Tytuł artykułu

Isolation and characterization of an Antarctic Flavobacterium strain with agarase and alginate lyase activities

Tytuł czasopisma

Polish Polar Research

Rocznik

2016

Wolumin

vol. 37

Numer

No 3

Autorzy

Słowa kluczowe

agarase ; alginate-lyase ; Antarctic ; Flavobacterium ; King George Island

Wydział PAN

Nauki o Ziemi

Zakres

403-419

Wydawca

Polish Academy of Sciences ; Committee on Polar Research

Data

2016

Typ

Artykuły / Articles

Identyfikator

DOI: 10.1515/popore-2016-0021 ; ISSN 0138-0338 ; eISSN 2081-8262

Źródło

Polish Polar Research; 2016; vol. 37; No 3; 403-419

Referencje

BROWN (1991), Guluronan - specific alginate lyase from a marine bacterium associated with Sargassum, Carbohydrate Research, 211. ; TOUCHON (2011), Complete genome sequence of the fish pathogen Flavobacterium branchiophilum, Applied and Environmental Microbiology, 77, 7656, doi.org/10.1128/AEM.05625-11 ; KIM (2014), Flavobacterium faecale sp nov an agarase - producing species isolated from stools of Antarctic penguins of Systematic and Evolutionary, International Journal Microbiology, 64, 2884. ; SHIN (2009), Global metabolic profiling of plant cell wall plysacharide degradation by Saccharophagus degradans and, Biotechnology Bioengineering, 105, 477, doi.org/10.1002/bit.22557 ; FU (2010), Agarase : Review of Major Sources Categories Purifi cation Method Enzyme Characteristics and Applications, Marine Drugs, 8, 200, doi.org/10.3390/md8010200 ; EKBORG (2005), Saccharophagus degradans gen nov sp nov a versatile marine degrader of complex polysaccharides of Systematic and Evolutionary, International Journal Microbiology, 55, 1545. ; GUINDON (2003), A simple fast and accurate algorithm to estimate large phylogenies by maximum likelihood, Systematic Biology, 52, 696, doi.org/10.1080/10635150390235520 ; FELSENSTEIN (2005), PHYLIP ( Phylogeny Inference Package ) Department of Genetics University of Washington Seattle WA, USA, 3. ; ZHANG (2010), Research and application of marine microbial enzymes : status and prospects, Marine Drugs, 8, 1920, doi.org/10.3390/md8061920 ; JIANG (2006), Microbial diversity in water and sediment of Lake Chaka an athalassohaline lake in northwestern China, Applied and Environmental Microbiology, 72, 3832, doi.org/10.1128/AEM.02869-05 ; MILLER (1959), Use of dinitrosalicylic acid reagent for determination of reducing sugar, Analytical Chemistry, 31, 426, doi.org/10.1021/ac60147a030 ; SARKAR (2010), Bioprocessing data for the production of marine enzymes, Marine Drugs, 19, 1323, doi.org/10.3390/md8041323 ; ROMEO (1986), Purifi cation and structural properties of an extracellular - β mannuronan - specific alginate lyase from a marine bacterium Marine Microbial Enzymes : Current Status and Future Prospects Springer Handbook of Marine Biotechnology Springer, Biochemistry, 25, 1, doi.org/10.1021/bi00374a009 ; BOYEN (1990), Preparation of guluronate lyase from Pseudomonas alginovora for protoplast isolation in Laminaria Enzyme and, Microbial Technology, 12, 885, doi.org/10.1016/0141-0229(90)90027-N ; THOMAS (2012), Characterization of the fi rst alginolytic operons in a marine bacterium : from their emergence in marine Flavobacteria to their independent transfers to marine Proteobacteria and human gut Bacteroides, Environmental Microbiology, 14, 2379, doi.org/10.1111/j.1462-2920.2012.02751.x ; YUN (2011), Production of anhydro - lgalactose from agarose by agarolytic enzymes of Saccharophagus degradans, Process Biochemistry, 46, 88, doi.org/10.1016/j.procbio.2010.07.019 ; TAMURA (2011), MEGA molecular evolutionary genetics analysis using maximum likelihood evolutionary distance and maximum parsimony methods and, Molecular Biology Evolution, 5, 2731, doi.org/10.1093/molbev/msr121 ; RAMÍREZ (2008), Bosque : integrated phylogenetic analysis software, Bioinformatics, 24, 2539, doi.org/10.1093/bioinformatics/btn466 ; HUANG (2013), Characterization of a new alginate lyase from newly isolated Flavobacterium sp and, Journal of Industrial Microbiology Biotechnology, 40, 113, doi.org/10.1007/s10295-012-1210-1 ; SHIN (2010), Global metabolite profiling of agarose degradation by Saccharophagus degradans, New Biotechnology, 27, 156, doi.org/10.1016/j.nbt.2010.02.023 ; STEVENS (1977), Purifi cation and characteristics of an alginase from Alginovibrio aquatilis, Applied and Environmental Microbiology, 33, 1156. ; GEORLETTE (2004), and GERDAY Some like it cold : biocatalysis at low temperatures, FEMS Microbiology Reviews, 28, 25, doi.org/10.1016/j.femsre.2003.07.003 ; EDGAR (2004), MUSCLE : multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, 32, 1792, doi.org/10.1093/nar/gkh340 ; HOSODA (2003), Isolation and characterization of agar - degrading Paenibacillus spp associated with the rhizosphere of spinach Bioscience , Biotechnology and, Biochemistry, 67, 1048. ; RATKOWSKY (1983), Model for bacterial culture growth rate throughout the entire biokinetic temperature range, Journal of Bacteriology, 154. ; HEHEMANN (2012), Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate - active enzyme updates from extrinsic microbes Proceedings of the National Academy of, Sciences, 109, 19786. ; PEETERS (2011), The gyrB gene is a useful phylogenetic marker for exploring the diversity of Flavobacterium strains isolated from terrestrial and aquatic habitats in Antarctica, FEMS Microbiology Letters, 321. ; WONG (2000), Alginate lyase : review of major sources and enzyme characteristics structure - function analysis biological roles and applications of, Annual Review Microbiology, 54, 289, doi.org/10.1146/annurev.micro.54.1.289 ; HASEGAWA (1985), Dating of the human - ape splitting by a molecular clock of mitochondrial DNA, Journal of Molecular Biology, 22, 160. ; KIM (2012), Depolymerization of alginate into a monomeric sugar acid using Alg an exo - oligoalginate lyase cloned from Saccharophagus degradans and, Applied Microbiology Biotechnology, 17, 2233, doi.org/10.1007/s00253-012-3882-x ; LOPERENA (2012), Extracellular enzymes produced by microorganisms isolated from maritime Antarctica of and, World Journal Microbiology Biotechnology, 28, 2249, doi.org/10.1007/s11274-012-1032-3 ; HUTCHESON (2011), Carbohydrase systems of Saccharophagus degradans degrading marine complex polysaccharides, Marine Drugs, 9, 645, doi.org/10.3390/md9040645 ; STACH (2010), Antimicrobials : treasures from the ocean, Microbiology Today, 37, 104. ; ALTSCHUL (1990), Basic local alignment search tool, Journal of Molecular Biology, 215. ; OIKAWA (2003), Paradoxical thermostable enzymes from psychrophile : molecular characterization and potentiality for biotechnological application :, Journal of Molecular Catalysis B Enzymatic, 23, 65, doi.org/10.1016/S1381-1177(03)00073-0 ; THOMAS (2011), Environmental and gut bacteroidetes : the food connection in, Frontiers Microbiology, 2, 1, doi.org/10.3389/fmicb.2011.00093 ; HEHEMANN (2010), Transfer of carbohydrate - active enzymes from marine bacteria to Japanese gut microbiota, Nature, 464. ; DELATTRE (2011), Galactans : an overview of their most important sourcing and applications as natural polysaccharides and, Brazilian Archives of Biology Technology, 54, 1075, doi.org/10.1590/S1516-89132011000600002 ; KAZUOKA (2003), Thermostable aspartase from a marine psychrophile Cytophaga molecular characterization and primary structure, Journal of Biochemistry, 133.

Rada naukowa


Editorial Advisory Board


Angelika BRANDT (Hamburg),

Claude DE BROYER (Bruxelles),

Peter CONVEY (Cambridge, UK),

J. Alistair CRAME (Cambridge, UK),

Rodney M. FELDMANN (Kent, OH),

Jane E. FRANCIS (Cambridge, UK),

Andrzej GAŹDZICKI (Warszawa)

Aleksander GUTERCH (Warszawa),

Jacek JANIA (Sosnowiec),

Jiří KOMÁREK (Třeboň),

Wiesława KRAWCZYK (Sosnowiec),

German L. LEITCHENKOV (Sankt Petersburg),

Jerónimo LÓPEZ-MARTINEZ (Madrid),

Sergio A. MARENSSI (Buenos Aires),

Jerzy NAWROCKI (Warszawa),

Ryszard OCHYRA (Kraków),

Maria OLECH (Kraków)

Sandra PASSCHIER (Montclair, NJ),

Jan PAWŁOWSKI (Genève),

Gerhard SCHMIEDL (Hamburg),

Jacek SICIŃSKI (Łódź),

Michael STODDART (Hobart),

Witold SZCZUCIŃSKI (Poznań),

Andrzej TATUR (Warszawa),

Wim VADER (Tromsø),

Tony R. WALKER (Halifax, Nova Scotia),

Jan Marcin WĘSŁAWSKI (Sopot) - President.

Indeksowanie w bazach

Abstracting & Indexing


Polish Polar Research is covered by the following services:

  • AGRICOLA (National Agricultural Library)
  • AGRO
  • Arianta
  • Baidu Scholar
  • Cabell's Directory
  • CABI (over 50 subsections)
  • Celdes
  • CNKI Scholar (China National Knowledge Infrastructure)
  • CNPIEC
  • Cold Regions Bibliography
  • Current Antarctic Literature
  • DOAJ (Directory of Open Access Journals)
  • EBSCO (relevant databases)
  • EBSCO Discovery Service
  • Elsevier - Geobase
  • Elsevier - Reaxys
  • Elsevier - SCOPUS
  • Genamics JournalSeek
  • Google Scholar
  • J-Gate
  • JournalTOCs
  • Naviga (Softweco)
  • Polish Scientific Journals Contents
  • Primo Central (ExLibris)
  • ProQuest (relevant databases)
  • ReadCube
  • ResearchGate
  • SCImago (SJR)
  • Summon (Serials Solutions/ProQuest)
  • TDOne (TDNet)
  • Thomson Reuters - Biological Abstracts
  • Thomson Reuters - BIOSIS Previews
  • Thomson Reuters - Journal Citation Reports/Science Edition
  • Thomson Reuters - Science Citation Index Expanded
  • Thomson Reuters - Zoological Record
  • Ulrich's Periodicals Directory/ulrichsweb
  • WorldCat (OCLC)
×