Szczegóły

Tytuł artykułu

The high resolution melting PCR protocol for rapid identification of single nucleotide substitutions in cytochrome c oxidase subunit II of Globodera pallida populations assigned to three pathotypes as an attempt of their differentiation

Tytuł czasopisma

Journal of Plant Protection Research

Rocznik

2021

Wolumin

vol. 61

Numer

No 4

Afiliacje

Budziszewska, Marta : Department of Molecular Biology and Biotechnology, Institute of Plant Protection – National Research Institute, Poznań, Poland

Autorzy

Słowa kluczowe

Globodera pallida ; high resolution melting (HRM) ; mtCOII genetic diversity ; pathotypes

Wydział PAN

Nauki Biologiczne i Rolnicze

Zakres

430-433

Wydawca

Committee of Plant Protection PAS ; Institute of Plant Protection – National Research Institute

Bibliografia


Bakker J., Bouwman-Smits L., Gommers F.J. 1992. Genetic relationships betacceween Globodera pallida pathotypes in Europe assessed by using two dimensional gel electrophoresis of proteins. Fundamental and Applied Nematology 15: 481–490.
Bates J.A., Taylor E.J.A., Gans P.T., Thomas J.E. 2002. Determination of relative proportions of Globodera species in mixed populations of potato cyst nematodes using PCR product melting peak analysis. Molecular Plant Pathology 3 (3): 153–161. DOI: https://doi.org/10.1046/j.1364-3703.2002.00107.x
Bulman S.R., Marshall J.W. 1997. Differentiation of Australa- sian potato cyst nematode (PCN) populations using the polymerase chain reaction (PCR). New Zealand Journal of Crop and Horticultural Science 25 (2): 123–129.
Burrows P.R., Boffey S.A. 1986. A technique for the extraction and restriction endonuclease digestion of total DNA from Globodera rostochiensis and Globodera pallida second stage juveniles. Revue de Nematologie 9 (2): 199–200.
EPPO. 2017. 7/40 (4) Globodera rostochiensis and Globodera pallida. EPPO Bulletin 47: 174–197.
Folkertsma R.T., der Voort J., van Gent-Pelzer M.P.E., De Groot K.E., van Den Bos W.J., Schots A., Bakker J., Gommers F.J. 1994. Inter-and intraspecific variation between populations of Globodera rostochiensis and G. pallida revealed by random amplified polymorphic DNA. Phytopathology 84 (8): 807–811.
Fox P.C., Atkinson H.J. 1984. Isoelectric focusing of general protein and specific enzymes from pathotypes of Globodera rostochiensis and G. pallida. Parasitology 88 (1): 131–139. DOI: https://doi.org/10.1017/S0031182000054408
Hinch J.M., Alberdi F., Smith S.C., Woodward J.R., Evans K. et al. 1998. Discrimination of European and Australian Globodera rostochiensis and G. pallida pathotypes by high performance capillary electrophoresis. Fundamental and Applied Nematology 21 (2): 123–128.
Hoolahan A.H., Blok V.C., Gibson T., Dowton M. 2012. A comparison of three molecular markers for the identification of populations of Globodera pallida. Journal of Nematology 44 (1): 7.
Kort J., Ross H., Rumpenhorst H.J., Stone A.R. 1977. An international scheme for identifying and classifying pathotypes of potato cyst-nematodes Globodera rostochiensis and G. pallida. Nematologica 23 (3): 333–339.
Madani M., Subbotin S.A., Moens M. 2005. Quantitative detection of the potato cyst nematode, Globodera pallida, and the beet cyst nematode, Heterodera schachtii, using real-time PCR with SYBR green I dye. Molecular and Cellular Probes 19 (2): 81–86.
Nakhla M.K., Owens K.J., Li W., Wei G., Skantar A.M., Levy L. 2010. Multiplex real-time PCR assays for the identification of the potato cyst and tobacco cyst nematodes. Plant Disease 94 (8): 959–965.
Nowaczyk K., Dobosz R., Budziszewska M., Kamasa J., Obrępalska-Stęplowska A. 2011. Analysis of diversity of golden potato cyst nematode (Globodera rostochiensis) populations from Poland using molecular approaches. Journal of Phytopathology 159 (11–12): 759–766.
Nowaczyk K., Dobosz R., Kornobis S., Obrepalska-Steplowska A. 2008. TaqMan REAL-Time PCR-based approach for differentiation between Globodera rostochiensis (golden nematode) and Globodera artemisiae species. Parasitology Research 103 (3): 577–581.
Phillips M.S., Trudgill D.L. 1983. Variations in the ability of Globodera pallida to produce females on potato clones bred from Solanum vernei or S. tuberosum ssp. andigena CPC 2802. Nematologica 29 (2): 217–226.
Phillips M.S., Trudgill D.L. 1998. Variation of virulence, in terms of quantitative reproduction of Globodera pallida populations, from Europe and South America, in relation to resistance from Solanum vernei and S. tuberosum ssp. andigena CPC 2802. Nematologica 44 (4): 409–423.
Saenz M.C., De Scurrah M.M. 1977. Races of the potato cyst nematode in the Andean region and a new system of classification. Nematologica 23 (3): 340–349.
Schnick D., Rumpenhorst H.J., Burgermeister W. 1990. Differentiation of closely related Globodera pallida (Stone) populations by means of DNA restriction fragment length polymorphisms (RFLPs). Journal of Phytopathology 130 (2): 127–136.
Sedlak P., Melounova M., Skupinova S., Vejl P., Domkarova J. 2004. Study of European and Czech populations of potato cyst nematodes (Globodera rostochiensis and G. pallida) by RAPD method. Plant Soil and Environment 50 (2): 70–74.
Subbotin S.A., Franco J., Knoetze R., Roubtsova T.V., Bostock R.M., Del Prado Vera I.C. 2020. DNA barcoding, phylogeny and phylogeography of the cyst nematode species from the genus Globodera (Tylenchida: Heteroderidae). Nematology 22 (3): 269–297.
Thiery M., Fouville D., Mugniery D. 1997. Intra-and interspecific variability in Globodera, parasites of Solanaceous plants, revealed by Random Amplified Polymorphic DNA (RAPD) and correlation with biological features. Fundamental and Applied Nematology 20 (5): 495–504.
Vejl P., Skupinova S., Sedlak P., Domkarova J. 2002. Identification of PCN species (Globodera rostochiensis, G. pallida) by using of ITS-1 region’s polymorphism. Rostlinna Vyroba 48 (11): 486–489.
Zouhar M., Ryšanek P., Kočova M. 2000. Detection and differentiation of the potato cyst nematodes Globodera rostochiensis and Globodera pallida by PCR. Plant Protection Science 36 (3): 81–84.

Data

2021.12.30

Typ

Article

Identyfikator

DOI: 10.24425/jppr.2021.139241 ; ISSN 1427–4345 ; eISSN 1899–007X
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