Details

Title

Application of aptamer-based viral detection in animals

Journal title

Polish Journal of Veterinary Sciences

Yearbook

2023

Volume

vol. 26

Issue

No 3

Authors

Affiliation

Zhang, W. : Guangdong Eco-Engineering Polytechnic, 297# Guangshan 1st Road, Guangzhou 510520, Guangdong, China ; Luo, J. : Guangdong Eco-Engineering Polytechnic, 297# Guangshan 1st Road, Guangzhou 510520, Guangdong, China ; Xiao, L. : Guangdong Laboratory Animals Monitoring institute and Guangdong Provincial Key Laboratory of Laboratory Animals, 11# Fengxin Road, Guangzhou 510033, Guangdong, China ; Wu, M. : Guangdong Laboratory Animals Monitoring institute and Guangdong Provincial Key Laboratory of Laboratory Animals, 11# Fengxin Road, Guangzhou 510033, Guangdong, China ; Zhu, Y. : Guangdong Laboratory Animals Monitoring institute and Guangdong Provincial Key Laboratory of Laboratory Animals, 11# Fengxin Road, Guangzhou 510033, Guangdong, China ; Cong, F. : Guangdong Laboratory Animals Monitoring institute and Guangdong Provincial Key Laboratory of Laboratory Animals, 11# Fengxin Road, Guangzhou 510033, Guangdong, China

Keywords

aptamer ; virus ; biosensor ; animal

Divisions of PAS

Nauki Biologiczne i Rolnicze

Coverage

521–529

Publisher

Polish Academy of Sciences Committee of Veterinary Sciences ; University of Warmia and Mazury in Olsztyn

Bibliography

  1. Bai H, Wang RH, Hargis B, Lu HG, Li YB (2012) A SPR aptasensor for detection of avian influenza virus H5N1. Sensors 12: 12506-12518.
  2. Banerjee J, Nilsen-Hamilton M (2013) Aptamers: multifunctional molecules for biomedical research. J Mol Med 91: 1333-1342.
  3. Bruno JG, Carrillo MP, Phillips T (2008) Development of DNA aptamers to a foot-and-mouth disease peptide for competitive FRET-based detection. J Biomol Tech 19: 109-115.
  4. Chakraborty B, Das S, Gupta A, Xiong YY, Vushnavi T-V, Kizer ME, Duan JW, Chandrasekaran AR, Wang X (2022). Aptamers for viral detection and inhibition. ACS Infect Dis 8: 667-692.
  5. Chauhan VM, Elsutohy MM, McClure CP, Irving WL, Roddis N, Aylott JW (2021) Gold-Oligonucleotide nanoconstructs engineered to detect conserved enteroviral nucleic acid sequences. Biosensors 11:238.
  6. Chen CH, Zou Z, Chen L, Ji XH, He ZK (2016) Functionalized magnetic microparticle-based colorimetric platform for influenza A virus detection. Nanotechnology 27: 435102.
  7. Chen ZQ, Wu QH, Chen J, Ni XH, Dai JF (2020) A DNA aptamer based method for detection of SARS-CoV-2 nucleocapsid protein. Virol Sin 35: 351-354.
  8. D’Cruz RJ, Currier AW, Sampson VB (2020) Laboratory testing methods for novel Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2). Front Cell Dev Biol 8: 468.
  9. Damase TR, Miura TA, Parent CE, Allen PB (2018) Application of the Open qPCR Instrument for the in Vitro Selection of DNA aptamers against epidermal growth factor receptor and Drosophila C virus. ACS Comb Sci 20: 45-54.
  10. Darmostuk M, Rimpelova S, Gbelcova H, Ruml T (2015) Current approaches in SELEX: An update to aptamer selection technology. Biotechnol Adv 33: 1141-1161.
  11. Diba FS, Kim S, Lee HJ (2015) Amperometric bioaffinity sensing platform for avian influenza virus proteins with aptamer modified gold nanoparticles on carbon chips. Biosens Bioelectron 72: 355-361.
  12. Ellenbecker M, Sears L, Li P, Lanchy JM, Lodmell JS (2012) Characterization of RNA aptamers directed against the nucleocapsid protein of Rift Valley fever virus. Antiviral Res 93: 330-339.
  13. Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
  14. Hmila I, Wongphatcharachai M, Laamiri N, Aouini R, Marnissi B, Arbi M, Streevatsan S, Ghram A (2017) A novel method for detection of H9N2 influenza viruses by an aptamer-real time-PCR. J Virol Methods 243: 83-91.
  15. Hong KL, Sooter LJ (2015) Single-Stranded DNA aptamers against pathogens and toxins: identification and biosensing applications. Biomed Res Int 2015: 419318.
  16. Hwang SD, Midorikawa N, Punnarak P, Kikuchi Y, Kondo H, Hirono I, Aoki T (2012) Inhibition of Hirame rhabdovirus growth by RNA aptamers. J Fish Dis 35: 927-934.
  17. Iliuk AB, Hu LH, Tao WA (2011) Aptamer in bioanalytical applications. Anal Chem 83: 4440-4452.
  18. Jafari M, Rezaei M, Kalantari H, Tabarzad M, Daraei B (2018) DNAzyme-aptamer or aptamer-DNAzyme paradigm: Biochemical approach for aflatoxin analysis. Biotechnol Appl Biochem 65:274-280.
  19. Kacherovsky N, Yang LF, Dang HV, Cheng EL, Cardle II, Walls AC, McCallum M, Sellers DL, DiMaio F, Salipante SJ, Corti D, Veesler D, Pun SH (2021) Discovery and characterization of spike N-Terminal domain-binding aptamers for rapid SARS-CoV-2 detection. Angew Chem Int Ed Engl 60: 21211-21215.
  20. Kaur A, Kaur P, Ahuja S (2021) Förster resonance energy transfer (FRET) and applications thereof. Anal Methods 12:5532-5550.
  21. Kim YS, Gu MB (2014) Advances in aptamer screening and small molecule aptasensors. Adv Biochem Eng Biotechnol 140: 29-67.
  22. Labib M, Zamay AS, Muharemagic D, Chechik A, Bell JC, Berezovski MV (2012) Electrochemical sensing of aptamer-facilitated virus immunoshielding. Anal Chem 84: 1677-1686.
  23. Le TT, Adamiak B, Benton DJ, Johnson CJ, Sharma S, Fenton R, McCauley JW, Iqbal M, Cass, AEG (2014) Aptamer-based biosensors for the rapid visual detection of flu viruses. Chem Commun (Camb) 50: 15533-15536.
  24. Lee JL, Stovall GM, Ellington AD (2006) Aptamer therapeutics advance. Curr Opin Chem Biol 10: 282-289.
  25. Li JX, Zhang ZJ, Gu J, Stacey HD, Ang JC, Capretta A, Filipe CDM, Mossman KL, Balion C, Salena BJ, Yamamura D, Soleymani L, Miller MS, Brennan JD, Li YF (2021) Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library. Nucleic Acids Res 49: 7267-7279.
  26. Li P, Zhou L, Wei J, Yu Y, Yang M, Wei S, Qin Q (2016) Development and characterization of aptamer-based enzyme-linked apta-sorbent assay for the detection of Singapore grouper iridovirus infection. J Appl Microbiol 121: 634-643.
  27. Lichty BD, Power AT, Stojdl DF, Bell JC (2004) Vesicular stomatitis virus: re-inventing the bullet. Trends Mol Med 10: 210-216.
  28. Liu JX, Qin QW, Zhang XY, Li C, Yu YP, Huang XH, Mukama O, Zeng LW, Wang SW (2020) Development of a novel lateral flow biosensor combined with aptamer-based isolation: application for rapid detection of grouper nervous necrosis virus. Front Microbiol 11: 886.
  29. Lou BB, Liu YF, Shi ML, Chen J, Li K, Tan YF, Chen LW, Wu YW, Wang T, Liu XQ, Jiang T, Peng DM, Liu ZB (2022) Aptamer-based biosensors for virus protein detection. Trends Analyt Chem 157: 116738.
  30. Lu TF, Ma Q, Yan WZ, Wang YZ, Zhang YY, Zhao LL, Chen HY (2018) Selection of an aptamer against Muscovy duck parvovirus for highly sensitive rapid visual detection by label-free aptasensor. Talanta 176: 214-220.
  31. Lum J, Wang RH, Hargis B, Tung S, Bottje W, Lu HG, Li YB (2015) An impedance aptasensor with microfluidic chips for specific detection of H5N1 avian influenza virus. Sensors 15: 18565-18578.
  32. Negri P, Chen GJ, Kage A, Nitsche A, Naumann D, Xu BQ, Dluhy RA (2012) Direct optical detection of viral nucleoprotein binding to an anti-influenza aptamer. Anal Chem, 84: 5501-5508.
  33. Ouellet E, Foley JH, Conway EM, Haynes C (2015) Hi-Fi SELEX: A high-fidelity digital-PCR based therapeutic aptamer discovery platform. Biotechnol Bioeng 112: 1506-1522.
  34. Park JW, Lee SJ, Choi EJ, Kim J, Song JY, Gu MB (2014) An ultra-sensitive detection of a whole virus using dual aptamers developed by immobilization-free screening. Biosens Bioelectron 51: 324-329.
  35. Pfeiffer F, Mayer G (2016) Selection and biosensor application of aptamers for small molecules. Front Chem 4: 25.
  36. Prabhakar PK, Lakhanpal J (2020) Recent advances in the nucleic acid-based diagnostic tool for coronavirus. Mol Biol Rep 47: 9033-9041.
  37. Reinemann C, Stoltenburg R, Strehlitz B (2009) Investigations on the specificity of DNA aptamers binding to ethanolamine. Anal Chem 81: 3973-3978.
  38. Robertson DL, Joyce GF (1990) Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 344: 467-468.
  39. Romero-Lopez C, Berzal-Herranz A (2017) Aptamers: Biomedical interest and applications. Pharmaceuticals 10:32.
  40. Sett A, Das S, Bora U (2014) Functional nucleic-acid-based sensors for environmental monitoring. Appl Biochem Biotechnol 174: 1073-1091.
  41. Storch GA (2000) Diagnostic virology. Clin Infect Dis 31: 739-751.
  42. Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
  43. Wang HY, Wu SQ, Jiang L, Xiao RH, Li T, Mei L, Lv JZ, Liu JJ, Lin XM, Han XQ (2018) Establishment and optimization of a liquid bead array for the simultaneous detection of ten insect-borne pathogens. Parasit Vectors 11: 442.
  44. Wang RH, Li YB (2013) Hydrogel based QCM aptasensor for detection of avian influenza virus. Biosens Bioelectron 42: 148-155.
  45. Wang RH, Xu LZ, Li YB (2015) Bio-nanogate controlled enzymatic reaction for virus sensing. Biosens Bioelectron 67: 400-407.
  46. Wu JJ, Zhu YY, Xue F, Mei ZL, Yao L, Wang X, Zheng L, Liu J, Liu GD, Peng CF, Chen W (2014) Recent trends in SELEX technique and its application to food safety monitoring. Mikrochim Acta 181: 479-491.
  47. Zhang ZJ, Pandey R, Li JX, Gu J, White D, Stacey HD, Ang JC, Steinberg CJ, Capretta A, Filipe CDM, Mossman K, Balion C, Miller MS, Salena BJ, Yamamura D, Soleymani L, Brennan JD, Li YF (2021) High-affinity dimeric aptamers enable the rapid electrochemical detection of wild-type and B.1.1.7 SARS-CoV-2 in Unprocessed Saliva. Angew Chem Int Ed Engl 60: 24266-24274.

Type

Review paper

Identifier

DOI: 10.24425/pjvs.2023.145056
×