Szczegóły
Tytuł artykułu
In vitro validation of in silico-selected targets for PCR detection of genus Mycobacterium and species Mycobacterium marinumTytuł czasopisma
Polish Journal of Veterinary SciencesRocznik
2025Wolumin
vol. 28Numer
No 4Autorzy
Afiliacje
Zygała-Pytlos, D. : Institute of Medical Biology, Polish Academy of Sciences, Lodowa 106, 93-232, Lodz, Poland ; Zygała-Pytlos, D. : The Bio-Med-Chem Doctoral School of the University of Lodz and Lodz Institutes of the Polish Academy of Sciences, Matejki 21/23, 90-237, Lodz, Poland ; Kuzioła, M. : Institute of Medical Biology, Polish Academy of Sciences, Lodowa 106, 93-232, Lodz, Poland ; Kuzioła, M. : The Bio-Med-Chem Doctoral School of the University of Lodz and Lodz Institutes of the Polish Academy of Sciences, Matejki 21/23, 90-237, Lodz, Poland ; Wrońska, N. : Department of Industrial Microbiology and Biotechnology, Faculty of Biology and Environmental Protection, University of Lodz, Banacha 12/16, 90-237, Lodz, Poland ; Zabost, A. : Department of Microbiology, National Tuberculosis and Lung Diseases Research Institute, Płocka 26, Warsaw, Poland ; Kozińska, M. : Department of Microbiology, National Tuberculosis and Lung Diseases Research Institute, Płocka 26, Warsaw, Poland ; Augustynowicz-Kopeć, E. : Department of Microbiology, National Tuberculosis and Lung Diseases Research Institute, Płocka 26, Warsaw, Poland ; Dziadek, J. : Institute of Medical Biology, Polish Academy of Sciences, Lodowa 106, 93-232, Lodz, Poland ; Minias, A. : Institute of Medical Biology, Polish Academy of Sciences, Lodowa 106, 93-232, Lodz, PolandSłowa kluczowe
Mycobacterium ; Mycobacterium marinum ; mmpl gene ; espE-2 gene ; PCRWydział PAN
Nauki Biologiczne i RolniczeZakres
583–595Wydawca
Polish Academy of Sciences Committee of Veterinary Sciences ; University of Warmia and Mazury in OlsztynBibliografia
Akram SM, Aboobacker S (2023) Mycobacterium marinum Infection. In: StatPearls. StatPearls Publishing, Treasure Island (FL).
Aubry A, Mougari F, Reibel F, Cambau E (2017) Mycobacterium marinum. Microbiol Spectr 5:10.
Bagcchi S (2023) WHO’s Global Tuberculosis Report 2022. The Lancet Microbe 4: e20.
Biet F, Boschiroli ML (2014) Non-tuberculous mycobacterial infections of veterinary relevance. Res Vet Sci 97: 69-77.
Bruce KD, Sihota KK, Byrne CD, Cagampang FR (2012) The housekeeping gene YWHAZ remains stable in a model of developmentally primed non-alcoholic fatty liver disease. Liver Int 32: 1315-1321.
Chihota VN, Grant AD, Fielding K, Ndibongo B, van Zyl A, Muirhead D, Churchyard GJ (2010) Liquid vs. solid culture for tuberculosis: performance and cost in a resource-constrained setting. Int J Tuberc Lung Dis 14: 1024-1031.
Chirakos AE, Nicholson KR, Huffman A, Champion PA (2020) Conserved ESX-1 substrates EspE and EspF are virulence factors that regulate gene expression. Infect Immun 88: e00289-20.
Coimbra NR, Goes-Neto A, Azevedo V, Ouangraoua A (2020) Reconstructing the phylogeny of Corynebacteriales while accounting for horizontal gene transfer. Gen Biol Evol 12: 381-395.
Doig C, Seagar AL, Watt B, Forbes KJ (2002) The efficacy of the heat killing of Mycobacterium tuberculosis. J Clin Pathol 55: 778-779.
Francis-Floyd R (2011) Mycobacterial infections of fish. SRAC 4706
Friedrich SO, Kolwijck E, Karinja MN, van der Merwe L, Diacon AH (2019) Quantification of viable bacterial load in artificial sputum spiked with Mycobacterium tuberculosis. Tuberculosis 115: 140-145.
Grant IR, Pope CM, O’Riordan LM, Ball HJ, Rowe MT (2000) Improved detection of Mycobacterium avium subsp. paratuberculosis in milk by immunomagnetic PCR. Vet Microbiol 77: 369-378.
Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, Sassetti Ch (2011) High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. PLoS Pathog 7: e1002251.
Hashish E, Merwad A, Elgaml S, Amer A, Kamal H, Elsadek A, Marei A, Sitohy M (2018) Mycobacterium marinum infection in fish and man: epidemiology, pathophysiology and management; a review. Vet Q 38: 35-46.
Hu Y, Jiang Q, Zhai X, Liu L, Hong Y (2023) Screening and validation of the optimal panel of reference genes in colonic epithelium and relative cancer cell lines. Sci Rep 13: 17777.
Jabłońska A, Świerzko AS, Studzińska M, Suski P, Kalinka J, Leśnikowski ZJ, Cedzyński M, Paradowska E (2020) Insight into the expression of RIG-I-like receptors in human third trimester placentas following ex vivo cytomegalovirus or vesicular stomatitis virus infection. Mol Immunol 126: 143-152.
Jauhal AA, Newcomb RD (2021) Assessing genome assembly quality prior to downstream analysis: N50 versus BUSCO. Mol Ecol Resour 21: 1416-1421.
Kanabalan RD, Lee LJ, Lee TY, Chong PP, Hassan L, Ismail R, Chin VK (2021) Human tuberculosis and Mycobacterium tuberculosis complex: a review on genetic diversity, pathogenesis and omics approaches in host biomarkers discovery. Microbiol Res 246: 126674.
Kim BJ, Kim BR, Lee SY, Kook YH, Kim BJ (2013) Rough colony morphology of Mycobacterium massiliense Type II genotype is due to the deletion of glycopeptidolipid locus within its genome. BMC Genomics 14: 890.
Klaschik S, Lehmann LE, Raadts A, Book M, Gebel J, Hoeft A, Stuber F (2004) Detection and differentiation of in vitro-spiked bacteria by real-time PCR and melting-curve analysis. J Clin Microbiol 42: 512-517.
Lai LY, Lin TL, Chen YY, Hsieh PF, Wang JT (2018) Role of the Mycobacterium marinum ESX-1 secretion system in sliding motility and biofilm formation. Front Microbiol 9: 1160.
Meehan CJ, Barco RA, Loh Y HE, Loh YH, Cogneau S, Rigouts L (2021) Reconstituting the genus Mycobacterium. Int J Syst Evol Microbiol 71: 004922.
Melly G, Purdy GE (2019) MmpL proteins in physiology and pathogenesis of M. tuberculosis. Microorganisms 7: 70.
Mohamed AM, Kuyper DJ, Iwen PC, Hesham HA, Dhundy RB, Hinrichs SH (2005) Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species. J Clin Microbiol 43: 3811-3817.
Molina-Ruiz CS, Zamora-Briseño JA, Simón O, Lasa R, Williams T (2024) A qPCR Assay for the quantification of selected genotypic variants of Spodoptera frugiperda multiple Nucleopolyhedrovirus (Baculoviridae). Viruses 16: 881.
Nessar R, Reyrat JM, Davidson LB, Byrd TF (2011) Deletion of the mmpL4b gene in the Mycobacterium abscessus glycopeptidolipid biosynthetic pathway results in loss of surface colonization capability, but enhanced ability to replicate in human macrophages and stimulate their innate immune response. Microbiology (Reading) 157: 1187-1195.
Peterson TS, Kent ML, Ferguson JA, Wartal VG, Whipps CM (2013) Comparison of fixatives, fixation time, and severity of infection on PCR amplification and detection of Mycobacterium marinum and Mycobacterium chelonae DNA in paraffin-embedded zebrafish (Danio rerio). Dis Aquat Organ 104: 113-120.
Sassetti CM, Boyd DH, Rubin EJ (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48: 77-84
Sia TY, Taimur S, Blau DM, Lambe J, Ackelsberg J, Yacisin K, Bhatnagar J, Ritter J, Shieh WJ, Muehlenbachs A, Shulman K, Fong D, Kung E, Zaki SR (2016) Clinical and pathological evaluation of Mycobacterium marinum group skin infections associated with fish markets in New York City. Clin Infect Dis 62: 590-595.
Singh AK, Maurya AK, Umrao J, Kant S, Kushwaha RAS, Nag VL, Dhole TN (2013) Role of GenoType® Mycobacterium Common Mycobacteria/Additional Species assay for rapid differentiation between Mycobacterium tuberculosis complex and different species of non-tuberculous mycobacteria. J Lab Physicians 5: 83-089.
Strobel K, Sickenberger C, Schoen C, Kneitz H, Kolb-Maurer A, Goebeler M (2022) Diagnosis and therapy of Mycobacterium marinum: a single-center 21-year retrospective analysis. J Dtsch Dermatol Ges 20: 1211-1218.
van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, Hermans P, Martin C, McAdam R, Shinnick TM (1993) Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 31: 406-409.