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Number of results: 26
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Abstract

The purpose of the presented studies was to determine the species composition of the fungi occurring on the underground parts of potato at an thesis and to establish the qualitative and quantitative composition ofmicroorganisms living in the soil environment of this plant. Besides, the studies aimed at finding antagonistic microorganisms inhibiting potato infection by soil-borne phytopathogens. The mycological analysis showed that the symptoms of necrosis on the roots and the stem base of potato were caused by Alternaria alternata, Fusarium spp., Colletotrichum coccodes and Rhizoctonia so/ani. The microbiological analysis of the potato rhizosphere gave twice as many bacteria and fungi as from the non-rhizosphere soil. The dominating pathogenic fungi in the examined soil samples were Fusarium spp., A. alternata and R. so/ani. Three times as many antagonistic bacteria Pseudomonas spp. and Bacillus spp. and more than twice as many antagonistic fungi (Penicillium spp., Trichoderma spp., Gliocladium spp.) were obtained from the potato rhizosphere as compared to the non-rhizosphere soil.
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Authors and Affiliations

Danuta Pięta
Elżbieta Patkowska
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Abstract

Roots of winter wheat grown in the field were examined for the occurrence of the fungi Gaeumannomyces graminis, Phialophora and Fusarium spp. Plants were sampled and examined in the autumn of 2000 and 2001 and in the following spring. Root systems were visually assessed and a percentage of affected roots were determined on 100 plants per field. More and less virulent members of the G. graminis- Phialophora complex and other fungi were isolated from infected roots. Above 85% of isolated fungi were classified as Gaeumannomyces-Phialophora complex. Morphological characteristics of the fungi isolated from plant roots were analysed in laboratory tests. In pathogenicity tests were assessed: disease severity, height of plants, percentage of chlorotic or necrotic leaves and biomass of whole plants.
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Authors and Affiliations

Agnieszka Mączyńska
Hanna Sikora
Barbara Krzyzińska
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Abstract

The increased cultivation of highbush blueberry in Poland has been paralleled with enhanced

damage to this crop by different pests and diseases, including soft scales. We have

carried out trials to assess methods for controlling soft scales of the genus Parthenolecanium

in highbush blueberry grown in open fields or under a plastic tunnel, with an approach

based on integrated pest management (IPM) principles. The reduction of Lecanium

scale population using alternative products, with mechanical mechanisms of action, was

similar to that achieved with treatments of different formulations of neonicotinyl-based

pesticides; sometimes they were even more effective on protected crops. Control programs

on plantations with a large population of Lecanium scales based on the application of these

alternative products in spring and at harvest time and chemical compounds in autumn resulted

in a very high efficacy and are considered the most suitable strategies to assure yields

without residues and a reduced impact on the environment.

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Authors and Affiliations

Małgorzata Tartanus
Eligio Malusa
Daniel Sas
Barbara Łabanowska
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Abstract

Field surveys were performed in winter and spring rape crops of agricultural companies and individual farmers during the period of 2001–2003. A questionnaire was completed for each experimental field, giving a description of the crop. The incidence and severity of fungal diseases were estimated annually in 14–18 winter and spring rape crops. Seed samples were taken from each field and composition fungal communities on harvested seed was estimated. Alternaria blight and Phoma stem canker were present on stems of all investigated winter and spring rape cultivars and Alternaria blight occurred on siliques in all experimental years. In 2001, most favourable year for spread of diseases, Alternaria blight damaged 87.2 100% of winter rape and 100% of spring rape siliques, maximum disease severity was 6.66 and 7.24%, respectively. All cultivars of winter and spring rape were susceptible to Alternaria blight. Phoma stem canker was more often found on stems of spring oilseed rape – up to 98% of stems with symptoms of Phoma stem canker. Seed fungal infection level was 10.0–100% in winter rape and 16.0–93.6% in spring rape seed samples. The most frequent fungi on seeds of winter and spring oilseed rape were Alternaria spp. and Cladosporium spp.

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Authors and Affiliations

Irena Brazauskiene
Egle Petraitiene
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Abstract

Due to inadequate efforts to reinforce nitrogen fixation capability of bean via symbiosis with rhizobia, improvement of bean productivity is still highly dependent on chemical fertilization. An advanced understanding of agro-ecosystem-bean-Rhizobium interaction is required to improve symbiosis efficiency. Thus, seasonal development of rhizobial nodulation was characterized according to 20 agro-ecological properties for 122 commercial bean fields. Principal component analysis identified soil texture as a major descriptor of agrosystem-bean-disease-Rhizobium interaction. Nonparametric correlation analysis indicated significant associations of root nodulation with bean class, fungicidal treatment of seed and soil, Fusarium root rot index, planting date and depth, soil texture, clay and sand content. Ordinal regression analysis demonstrated that rhizobial nodulation was improved by applying initial drought, heavier soil textures with greater organic matter and neutral pH, using herbicides and manure, growing white beans, irrigating every 7–9 days, later sowing in June, reducing disease and weed, shallower seeding, sowing beans after alfalfa, avoiding fungicidal treatment of seed and soil, and omitting urea application. This largescale study provided novel information on a comprehensive number of agronomic practices as potential tools for improving bean-Rhizobium symbiosis for sustainable legume production systems.

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Authors and Affiliations

Leila Tabande
Bita Naseri
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Abstract

The objective of this study was to evaluate the antagonistic activity of Trichoderma spp. against wild pathogen Fusarium oxysporum F.28.1A, which causes wilt disease on sesame. Twenty-six isolates of Trichoderma spp. isolated from soil samples were tested to control F. oxysporum F.28.1A. Prescreening showed that five isolates were T-02B1, T-18B2, T-20B1, T-28B1, and T-29A1, based on the lowest values of colony radius of F. oxysporum F.28.1A. The selected isolates were identified by their ITS region as T. yunnanense T-02B1, T. lentiforme T-18B2, T. asperellum T-20B1, T. hamatum T-28B1, and T. hamatum T-29A1, with similarities around 96–100%. The isolates selected were able to produce enzymes including chitinase, exo-β-1,3-glucanase, and endo-β-1,3-glucanase at levels of 0.34–0.44, 0.017–0.034, and 0.032–0.121 UI · ml –1, respectively, which were considered to be a mechanism to prevent the growth of F. oxysporum F.28.1A. The isolates tested were applied in soil pots to prevent damage from F. oxysporum F.28.1A as a following experiment. The greenhouse experiment was arranged in a completely randomized design with 10 treatments, including a negative control, application of only F. oxysporum F.28.1A, application of both F. oxysporum F.28.1A and fungicide chemicals, application of both F. oxysporum F.28.1A and Trichoderma spp. DHCT, application of T. yunnanense T-02B1, application of T. lentiforme T-18B2, application of T. asperellum T-20B1, application of T. hamatum T-28B1, application of T. hamatum T-29A1 and a mixture of the five selected isolates of Trichoderma spp. with their total population equal to that in individual strain application. The results showed that the five mixed isolates of Trichoderma had a synergistic effect on the reduction of the disease’s prevalence by 35% compared to the negative control treatment.
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Authors and Affiliations

Nguyen Quoc Khuong
1
Cao Thi Thuy Trang
1
Do Thi Xuan
2
Le Thanh Quang
2
Tran Ngoc Huu
1
Ly Ngoc Thanh Xuan
3
Jun-Ichi Sakagami
4
Le Vinh Thuc
1

  1. Faculty of Crop Science, College of Agriculture, Can Tho University, Viet Nam
  2. Biotechnology Research and Development Institute, Can Tho University, Viet Nam
  3. Experimental and Practical Area, An Giang University – Vietnam National University, Ho Chi Minh City, Viet Nam
  4. Tropical Crop Science Laboratory, Faculty of Agriculture, Kagoshima University, Japan
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Abstract

Helicobacter species have been reported in animals, some of which are of zoonotic importance. This study aimed to detect Helicobacter species among human and animal samples using conventional PCR assays and to identify their zoonotic potentials. Helicobacter species was identified in human and animal samples by genus-specific PCR assays and phylogenetic analysis of partial sequencing of the 16S ribosomal RNA gene. The results revealed that Helicobacter species DNA was detected in 13 of 29 (44.83%) of the human samples. H. pylori was identified in 2 (15.38%), and H. bovis was detected in 4 (30.77%), whereas 7 (53.85%) were unidentified. H. bovis and H. heilmannii were prevalent among the animal samples. Phylogenetic analysis revealed bootstrapping of sequences with H. cinaedi in camel, H. rappini in sheep and humans, and Wollinella succinogenes in humans. In conclusion, the occurrence of non-H. pylori infections among human and animal samples suggested zoonotic potentials.
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Bibliography


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Authors and Affiliations

A.I. Youssef
1
A. Afifi
2
S. Abbadi
3
A. Hamed
4
M. Enany
2

  1. Animal Hygiene and Zoonoses, Faculty of Veterinary Medicine, Suez Canal University, 41522, 4.5 Km Ring Road, Ismailia, Egypt
  2. Microbiology and Immunology Department, Faculty of Veterinary Medicine, Suez Canal University, Egypt
  3. Microbiology and Immunology Department, Faculty of Medicine, Suez University, 43512, Alsalam City, Suez, Egypt
  4. Biotechnology Department, Animal Health Research Institute, P.O. Box 264, Dokki, Giza 12618, Egypt
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Abstract

From Hedera helix and Epipremnum aureum showing necrosis of shoot base spread upwards and on leaves Phytophthora tropicalil was isolated. The species was obtained from ⅞of Hedera and ¾ of Epipremnum diseased shoot and root parts. Additionally, Botrytis cinerea, Fusarium avenaceum and Rhizoctonia solani was recovered from some of affected plants. The chosen 2 isolates colonised petioles and leaf blades of both host plants. P. tropicalis caused necrosis of leaves of 11 tested cultivars of H. helix and 13 other pot plant species and seedlings of tomato. The fastest spread of necrosis was observed on leaves of Peperomia magnoliaefolia, Pelargonium zonale and Phalaenopsis x hybridum. The development of disease was observed at temperatures ranged from 10 to 32.5°C with optimum 30°C.

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Authors and Affiliations

Leszek B. Orlikowski
Aleksandra Trzewik
Katarzyna Wiejacha
Grażyna Szkuta
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Abstract

Seed-borne diseases of wheat such as Fusarium head blight (FHB), a fungal disease caused by several species of Fusarium, results in reduced yield and seed quality. The aim of this study was to identify the Fusarium species, the effect of Fusarium-infected seeds on germination and vigor indices and to determine the location of Fusarium spp. in seeds, as well as to investigate the pathogenicity and variability of aggressiveness of the isolates obtained from pre-basic seeds wheat fields in Iran. According to morphological and molecular characters, the species F. graminearum, F. culmorum, F. avenaceum and F. poae were identified. Among the isolates, F. graminearum was the predominant species with the highest frequency and relative density of 92.9% and 70.9%, respectively. We observed that germination and vigor indices were decreased due to increased Fusarium-infected seeds. Results indicated significant differences among cultivars and seed-borne Fusarium levels. While a higher infection level of Fusarium spp. most commonly occurred in the seed coat, only F. graminearum was observed in embryos. Our study about pathogenicity showed that 77.3% of the Fusarium spp. isolates were not pathogenic and 22.7% isolates of Fusarium spp. were pathogenic or weakly pathogenic. Our results indicated that variability in aggressiveness among isolates of a species and positive correlation may be determined by pathogenicity tests. This is the first time the location of Fusarium spp. in seeds has been identified. It is also the first time that Fusarium-infected seeds in pre-basic seeds wheat fields of Iran have been evaluated.

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Authors and Affiliations

Farshid Hassani
Leila Zare
Nima Khaledi
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Abstract

The current study is the first phylogenetic and secondary RNA structure analysis of Dactylogyrus species parasitising gill filaments of Iraqi cyprinid fishes. Most previous phylogenetic studies have targeted on primary DNA sequence data. Nevertheless, RNA secondary configuration is principally helpful in systematics since they comprise features that do not appear in the primary sequence and provide morphological information. The primary objective was molecular-based identification of Dactylogyrids species using evolutionary tree and secondary RNA structure prediction. A total of 681 fish were collected from the Lesser Zab River in the northeast of Iraq in the sub-district of Altun-Kopru from August 2016 to September 2017 and brought to the Zoology Research Laboratory, Salahaddin University-Erbil, Iraq. All fish were classified as 18 cyprinid species. The species of Dactylogyrus were identified by the 28S rDNA subunit using PCR and sequencing methods, and the obtained nucleotide sequences were then compared with the available GenBank sequences. Phylogenetic relationships were concluded using Neighbour-Joining (NJ), Maximum Likelihood (ML), and Minimum Evolution (ME) methods. The results justify the validation of 11 Dactylogyrus species (three of them were newly recorded in Iraq). Additionally, out of nine infected fish species, seven of them were regarded as a new host for Dactylogyrus species. Secondary RNA configuration prediction using minimum free energy was considered as a hopeful tool for species identification. This was considered the first comprehensive phylogenetic study in the area. It was concluded that PCR sequencing, phylogenetic and secondary RNA analysis were proper molecular methods for identifying Dactylogyrids species on the gills of fishes.

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Authors and Affiliations

Q.M.K. Koyee
S.M.A. Abdullah
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Abstract

We described a first case of resistance to eprinomectin in goat herd in Poland in which resistance to benzimidazoles had been previously reported. The herd was established in 2011 by purchasing several goats from a single herd in south-eastern Poland. Resistance to benzimidazoles in the herd was first reported in 2017. Shortly after the owner started to signal low effectiveness of the treatment with eprinomectin. In June 2018 the larval development test from pooled faecal sample was performed and the results indicated the presence of resistance to macrocyclic lactones and levamisole. In July 2018 a faecal egg count (FEC) reduction test was performed in 39 animals with levamisole, eprinomectin and one untreated control group. Drugs were used in doses recommended for goats. Three methods of calculation of FEC reduction were compared. After eprinomectin treatment, FEC reduction ranged from 0 to 20%, depending on the method of calculation. FEC reduction following levamisole treatment was 100%. Main species present in the faecal samples after treatment and in larvicidal concentrations in larval development test was Haemonchus contortus. This is the first report of anthelminthic resistance to macrocylic lactones (eprinomectin) in goats in Poland.

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Authors and Affiliations

M. Mickiewicz
M. Czopowicz
A. Moroz
O. Szaluś-Jordanow
P. Górski
M. Várady
A. Königová
M. Spinu
M. Lefkaditis
J. Kaba
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Abstract

The rapid and accurate detection and identification of coal gangue is one of the premises and key technologies of the intelligent separation of coal gangue, which is of considerable importance for the separation of coal gangue. Focusing on the problems in the current deep learning algorithms for the detection and recognition of coal gangue, such as large model memory and slow detection speed, a rapid detection method for lightweight coal gangue is proposed. YOLOv3 is taken as the basic structure and improved. The MobileNetv2 lightweight feature extraction network is selected to replace Darknet53 as the main network of the detection algorithm to improve the detection speed. Spatial pyramid pooling (SPP) is added after the backbone network to convert different feature maps into fixed feature maps in order to improve the positioning accuracy and detection capability of the algorithm, thereby obtaining the lightweight network MS-YOLOV3. The experimental equipment was set up and multi-condition coal and gangue datasets were constructed. The model was trained and the identification and positioning results of the model were tested under different sizes, illumination intensities and various working conditions, and compared with other algorithms. Experimental results show that the proposed algorithm can detect the coal gangue quickly and accurately, with an mAP of 99.08%, a speed of 139 fps and a memory occupation of only 9.2 M. In addition, the algorithm can effectively detect mutually stacking coal and gangue of different quantities and sizes under different lights with high confidence and with a certain degree of environmental robustness and practicability. Compared with the YOLOv3, the performance of the proposed algorithm is significantly improved. Under the premise that the accuracy is unchanged, the FPS increases by 127.9% and the memory decreases by 96.2%. Therefore, the MS-YOLOv3 algorithm has the advantages of small memory, high accuracy and fast speed, which can provide online technical support for the detection and identification of coal and gangue.
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Authors and Affiliations

Deyong Li
1
Guofa Wang
2
ORCID: ORCID
Shuang Wang
3
Wenshan Wang
3
Ming Du
3

  1. State Key Laboratory of Mining Response and Disaster Prevention and Control in Deep Coal Mines, Anhui University of Science and Technology, Huainan 232001, China
  2. Collaborative Innovation Center for Mine Intelligent Technology and Equipment, Anhui University of Science and Technology, Huainan 232001, China
  3. China Coal Technology Engineering Group Coal Mining Research Institute, Beijing 100013, China
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Abstract

Cereal cyst nematodes (Heterodera spp.) are distributed globally and cause severe production losses of small grain cereals. To investigate the occurrence of cereal cyst nematodes in wheat-growing areas of Algeria, a survey was conducted and 27 cereal cyst nematode populations were collected. The populations were initially identified based on their morphological and morphometric characters, followed by molecular methods using speciesspecific primers, complemented by ITS-rDNA sequences. The morphological and morphometric features of second-stage juveniles (J2s) and cysts supported the presence of three Heterodera species: H. avenae, H. filipjevi and H. hordecalis. All morphological values of these distinct populations were very similar to those previously described for these species. Using species-specific primers for H. avenae and H. filipjevi, the specific bands of 109 bp and 646 bp confirmed the morphological identification of both species, respectively. In addition, the internal transcribed spacer (ITS) regions were sequenced to study the diversity of the 27 populations. These sequences were compared with those of Heterodera species available in the GenBank database (www.ncbi.nlm.nih.gov) and re-confirmed the identity of the species. Nineteen sequences of ITS-rDNA were similar (99–100%) to the sequences of H. avenae published in the GenBank, six sequences were similar (99–100%) to H. hordecalis, and two were similar (98–99%) to H. filipjevi. The results of this study are of great value to breeding programs and extension services, where they will contribute to the design of control measures to keep damaging nematodes in check.

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Authors and Affiliations

Djamel Smaha
Fouad Mokrini
Mustafa İmren
Aissa Mokabli
Abdelfattah A. Dababat
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Abstract

Tan spot, caused by Pyrenophora tritici-repentis (Ptr), is a worrisome destructive foliar disease of wheat-growing areas around the world. Streptomyces spp. have been investigated as biocontrol agents because they beneficially interact with host plants and produce important bioactive substances that can act in the suppression of diseases in plants. In the present study, antifungal activity and plant growth-promoting of Streptomyces spp. strains 6(4), R18(6), and their consortium, were evaluated through in vitro and greenhouse assays. The Ultra High-Performance Liquid Chromatography-Quadrupole Time-of-Flight Mass Spectrometry (UHPLC-QTOF MS) technique was used to analyze the crude extract of each strain. The results of the in vitro tests showed that the 6(4) metabolites caused several abnormalities in the conidial germination of Ptr. This strain also produced indole acetic acid (IAA) and siderophores. Strain R18(6) did not alter conidial germination of Ptr, and produced IAA and phosphate solubilizers. In the greenhouse, the treatment ‘seed inoculation plus foliar spray’ with streptomycetes propagules and metabolites contributed to biomass gain, with no statistical difference between the strains ( p < 0.05). Treatments with 6(4) ‘seed inoculation’, ‘seed inoculation plus foliar spray’, and consortium ‘seed inoculation’ showed the lowest percentage of injured area compared to other treatments ( p < 0.05). UHPLC-QTOF MS data showed that erucamide is present in the culture of 6(4), but not in the culture of R18(6). Therefore, this substance is one of those involved in Ptr hyphal abnormalities, and R18(6) use indirect mechanisms of action to control Ptr. We concluded that these Streptomyces spp. and their metabolites have a promising potential for biological control of Ptr to protect wheat plants from tan spot damage.
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Authors and Affiliations

Priscila Monteiro Pereira
1
Flávio Martins Santana
2
Alexsandro Dallegrave
3
Sueli Teresinha Van Der Sand
1

  1. Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
  2. Embrapa Clima Temperado, Estação Experimental Terras Baixas, Capão do Leão, Rio Grande do Sul, Brazil
  3. Departamento de Central Analítica, Instituto de Química, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
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Abstract

Blastocystis is a common enteric protozoan of humans and various species of animals. Culture and microscopic examination of fecal samples is the conventional method for identifying four major forms of Blastocystis (vacuolar, granular, non-vacuolar or cystic). In this article, we compared eight liquid media for cultivation of Blastocystis spp. Study material included fecal samples from clinically healthy pigs. Significant differences in the growth of Blastocystis on individual media were observed.

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Authors and Affiliations

A. Piekara-Stępińska
M. Gorczykowski
J. Piekarska
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Abstract

Cryptosporidium spp., and Giardia duodenalis are intestinal protozoan parasites known to infect humans and various animals and cause diarrhea. This study aimed at determining the prevalence and genotype of Cryptosporidium spp. and Giardia duodenalis in sheep in different locations of Siirt province. The fecal material for this study was collected from 500 sheep in different locations of Siirt province, Turkey. Fecal samples obtained from sheep were examined for Cryptosporidium spp. by Kinyoun Acid Fast staining and the Nested PCR method. Microscopic and Nested PCR methods revealed a prevalence of 2.4% (12/500) and 3.6% (18/500), respectively. Sequence analysis revealed the presence of C. ryanae, C. andersoni, and zoonotic C. parvum. In terms of Giardia duodenalis, 8.4% (42/500) and 10.2% (51/500) prevalence was determined using Nativ-Lugol and Nested PCR methods, respectively. Using sequence analysis, zoonotic assemblages A and B as well as assemblages E and D were detected. As a result of this study, both the prevalence of Cryptosporidium spp. and Giardia duodenalis and the presence of species that appear to be host-specific, as well as those known to be zoonotic, were revealed. A large-scale study is needed to understand the impact of these agents on sheep farming and their consequences on human health.
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Authors and Affiliations

B. Aslan Çelik
1
Ö.Y. Çelik
2
A. Ayan
3
Ö. Orunç Kılınç
4
G. Akyıldız
5
K. İrak
6
M.A. Selçuk
1
K. Ercan
2
V. Baldaz
2
Ö. Oktay Ayan
7

  1. Department of Parasitology, Faculty of Veterinary Medicine, Siirt University, Siirt, Turkey
  2. Department of Internal Medicine, Faculty of Veterinary Medicine, Siirt University, Siirt, Turkey
  3. Department of Genetics, Faculty of Veterinary Medicine, Van Yüzüncü Yıl University, Van, Turkey
  4. Özalp Vocational School, Van Yüzüncü Yıl University, Van, Turkey
  5. Department of Basic Health Sciences, Faculty of Health Sciences, Marmara University, İstanbul, Turkey
  6. Department of Biochemistry, Faculty of Veterinary Medicine, Siirt University, Siirt, Turkey
  7. Department of Parasitology, Van Yüzüncü Yıl University, Faculty of Medicine, Van, Turkey
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Abstract

Spitsbergen is the largest island in the Svalbard Archipelago (Norway) that has been permanently populated. The harsh Arctic climate prevents development of large vascular plants such as trees. A two-year aerobiological survey was conducted within the framework of two consecutive polar expeditions (2014 and 2015) in Spitsbergen (Calypsobyen, Bellsund). The air quality was measured continuously from June/July to August using a 7-day volumetric air sampler, Tauber trap and moss specimens. Collected air samples and gravimetric pollen deposits were processed following transfer to sterile laboratory conditions and analyzed with the aid of light microscopy. Days when pine pollen grains were detected in the air were selected for further analysis. Clusters of back-trajectories, computed using the Hybrid Single Particle Lagrangian Integrated Trajectory model in combination with ArcGIS software as well as the Flextra trajectory model, showed the movement of air masses to the sampling location at Hornsund, and thus indicated the likely origin of pollen grains. The GlobCover 2009 and CORINE Land Cover 2012 datasets were employed to establish the distribution of coniferous forests in the areas of interest. Conclusions were drawn based on the analyses of the circulation of air masses, using visualization of global weather conditions forecast to supercomputers. For the first time we have demonstrated that pine pollen grains occurring in pine-free Spitsbergen, could originate from numerous locations, including Scandinavia, Iceland, Siberia and northern Canada. Pollen grains were transported via air masses for distances exceeding ~2000 km. Both air samples and gravimetric pollen deposits revealed the same pattern of Pinus pollen distribution.
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Authors and Affiliations

Małgorzata Jędryczka
1
ORCID: ORCID
Beata Żuraw
2
ORCID: ORCID
Piotr Zagórski
3
Jan Rodzik
3
Karolina Mędrek
3
Irena Agnieszka Pidek
3
ORCID: ORCID
Weronika Haratym
4
ORCID: ORCID
Joanna Kaczmarek
1
ORCID: ORCID
Magdalena Sadyś
5
ORCID: ORCID

  1. Institute of Plant Genetics, Polish Academy of Science, Strzeszyńska 34, 60-479 Poznań, Poland
  2. Department of Hydrobiology and Protection of Ecosystems, University of Life Sciences in Lublin, Dobrzańskiego 37, 20-295 Lublin, Poland
  3. Institute of Earth and Environmental Sciences, Maria Curie-Skłodowska University, al. Kraśnicka 2D, 20-718 Lublin, Poland
  4. Paderewski Private Grammar School, Symfoniczna 1, 20-853 Lublin, Poland
  5. Rothamsted Research, West Common, Harpenden, AL5 2JQ, UK
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Abstract

Typhoid or enteric fever is a worldwide infection caused by the bacterium Salmonella enterica. In Sri Lanka, 12,823 Salmonella positive cases were recorded and 133 cases were recorded from Anuradhapura district during 2005 to 2014. Therefore, the study was carried out to identify the microbiological and chemical contamination status of forty-four water sources in Anuradhapura area during October 2016. The study was focused to determine total coliform, faecal coliform, Salmonella spp. and Shigella spp. contamination along with some physico-chemical parameters of both ground and surface water. Sampling, transportation, and analysis were performed following standard protocols. Results of the study revealed that almost all sampling locations were contaminated with both total and E. coli bacteria and the values were not within the World Health Organization and Sri Lanka Standards drinking water quality standards. Around 32% of sampling locations were positive for Salmonella spp. and among them, 2 spring sampling locations are being highly used to extract water for drinking. However, Shigella spp. was not recorded during the study period. Majority of the sampling points were not within the Sri Lanka drinking water standards for COD and 25% sampling locations were recorded greater than 750 μS∙cm–1 con-ductivity. Also, 55% of locations recorded very hard water where the highest values were recorded in Padaviya. The tested other water quality parameters: NO2-N, NH3-N, and total phosphate (TP) concentrations were found within the Sri Lanka drinking water standards. PCA analysis revealed that sampling locations were grouped into three groups such as; well wa-ter, tank water and springs.

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Authors and Affiliations

M.G.Y.L. Mahagamage
Pathmalal M. Manage
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Abstract

The paper attempts to assess the extent of crop loss in rubber plantations in India, measured in terms of loss in latex and timber output and thereby to examine the comparative economics of plant protection measures against Phytophtora spp. induced abnormal leaf fall (ALF). The specific objectives were: a) to examine the extent of loss in latex and timber output in unsprayed plots vis-a-vis sprayed plots across prominent rubber clones; b) estimate the value of loss in latex and timber output across clones between sprayed and unsprayed plots; c) examine the comparative economics of plant protection measures in terms of the incremental costs and the incremental returns from sprayed plots across clones; and d) reflect upon the policy imperatives with respect to region specific Research and Development (R&D) interventions on plant protection measures in India. The study brings out significant clonal differences in loss of latex and timber output in the absence of prophylactic spraying against ALF. The observed clonal differences with respect to feasibility of plant disease control measures indicate the need for region and clone-specific recommendations for plant protection measures in India instead of the currently followed unilateral prescription with due allowance to the costs and potential benefit accrued from the control measures. The study also highlight the need for evolving interventions and agro-management/ plant protection measures for minimising the incidence of tree casualty in rubber plantation, as it amounts to loss of potential income from latex and timber from rubber plantations in India, dominated by the smallholder sector

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Authors and Affiliations

Pozhamkandath K. Viswanathan
Tharian George Kadavil
Chakkasseril Kuruvilla Jacob
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Abstract

Stem base health of spring barley cultivated under organic, integrated and conventional systems and fungal communities were studied. A worst plant health status was observed in the organic system. The macroscopic and subsequent mycological analyses revealed the occurrence of Bipolaris sorokiniana and Fusarium spp. The incidence of B. sorokiniana on stem bases was clearly dependent on a farming system, and the highest incidence of this pathogen was observed in the organic system. Also, in that system, Fusarium spp. were isolated more numerously in the beginning of tillering, but in dough stage B. sorokiniana was the most prevalent pathogen, and Fusarium spp. were more numerous in integrated and conventional systems. It is worth to note that organic conditions could be favourable to Gliocladium spp. Because of growing interest in ecology, excluding the use of pesticides and increasing popularity of biological disease control, these antagonistic fungi could be useful in organic systems.

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Authors and Affiliations

Anna Baturo
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Abstract

Genetically modified Bt cotton (Gossypium hirsutum) leaves with typical symptoms of Alternaria early blight disease resembling that of tomato and potato were observed in the main cotton growing schemes in Sudan. Symptoms on leaves appeared as either brown 2leaf spot with gray centers or leaf blight with concentric rings. Pathogenicity tests using isolates with both symptoms showed that the isolated fungi were highly pathogenic to both G. hirsutum and G. barbadense cotton varieties. Alternaria alternata isolated from infected tomato and potato leaves with early blight symptoms was included for comparison. Microscopic examination showed that the mean length of conidia from cotton, tomato and potato isolates ranged from 26.25 to 45.45 μm, while the width ranged from 9.56 to 13.64 μm. The mean number of transverse septa among all isolates was 3.4 to 5.7 and the peak length ranged from 3.75 to 7.8 μm. Based on morphological characteristics the two isolates from cotton were identified as A. alternata. Genomic DNA was extracted directly from fungal cultures grown on potato dextrose agar (PDA) plates using a Zymo Research Quick DNA kit. A species-specific primer using the internal transcribed spacer ribosomal DNA (ITS rDNA) PCR scoring indicated the presence of A. alternata using primer pair ITS4/ITS5. Amplifications of the internal transcribed spacer region of 600 bp revealed 100% identity of the isolated fungus from cotton with A. alternata from tomato and potato. These data oblige us to reconsider the presence of A. alternata in the four main cotton growing schemes in Sudan while these symptoms have always been described for tomato and potato early blight disease.

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Authors and Affiliations

Omyma Elmahi Mohamed
Mayada Mamoun Beshir
Nafisa Elmahi Ahmed
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Abstract

Clethodim herbicide (Cle) and three Trichoderma strains (Tri) were applied either alone or in combination (Cle + Tri) for controlling weeds, root knot nematodes (Meloidogyne arenaria) and Rhizoctonia root rot disease (Rhizoctonia solani) as well as for evaluating their effects on total microbial count in the rhizosphere and the number of Rhizobium nodules on roots in two faba bean cultivars cultivated in naturally heavily infested fields. The evaluated characters were very similar for the two tested cultivars (Nubariya 1 and Sakha 3). Treatment with Cle alone highly reduced the fresh and dry matter of tested weeds (Amaranthus viridis, Cynodon dactylon and Cenchrus ciliaris), followed by Cle + Tri and Tri alone. Cle + Tri highly reduced nematode parameters viz. numbers of J2 in soil or roots, females, eggs, galls and egg-masses when compared with each treatment alone. Tri alone caused a great decrease in Rhizoctonia root rot infection, followed by Cle + Tri and Cle alone. Total microbial count and Rhizobium nodules were affected only with Cle treatment. Plant growth parameters (shoot length, shoot fresh and dry weight and numbers of branches and leaves) and yield parameters (fresh pod and dry weight, seed number per pod, seed weight and ash pod weight of plant) were greatly improved for Cle + Tri treatments when compared with either Tri or Cle alone.

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Authors and Affiliations

Mahmoud A.T. El-Dabaa
Hassan Abd-El-Khair
ORCID: ORCID
Wafaa M.A. El-Nagdi

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