Bibliografia
ARIMURA S. 2018. Fission and fusion of plant mitochondria, and genome maintenance. Plant Physiology 176(1): 152–161.
ARIMURA S, YAMAMOTO J, AIDA GP, NAKAZONO M, and TSUTSUMI N. 2004. Frequent fusion and fission of plant mito-chondria with unequal nucleoid distribution. Proceedings of the National Academy of Sciences of the U. S. A. 101(20): 7805–7808.
BARKMAN TJ, MCNEAL JR, LIM S-H, COAT G, CROOM HB, YOUNG ND, and DEPAMPHILIS CW. 2007. Mitochondrial DNA suggests at least 11 origins of parasitism in angios-perms and reveals genomic chimerism in parasitic plants. BMC Evolutionary Biology 7: 248.
BELLOT S, CUSIMANO N, LUO S, SUN G, ZARRE S, GRÖGER A, TEMSCH E, and RENNER SS. 2016. Assembled plastid and mitochondrial genomes, as well as nuclear genes, place the parasite family Cynomoriaceae in the Saxi-fragales. Genome Biology and Evolution 8(7): 2214–2230.
BERGTHORSSON U, ADAMS KL, THOMASON B, and PALMER JD. 2003. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424(6945): 197–201.
BERGTHORSSON U, RICHARDSON AO, YOUNG GJ, GOERTZEN LR, and PALMER JD. 2004. Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella. Proceedings of the National Academy of Sciences of the U. S. A. 101(51): 17747–17752.
BURKE SV, WYSOCKI WP, ZULOAGA FO, CRAINE JM, PIRES JC, EDGER PP, MAYFIELD-JONES D, CLARK LG, KELCHNER SA, and DUVALL MR. 2016. Evolutionary relationships in panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). BMC Plant Biology 16(1): 140.
CAI L, ARNOLD BJ, XI Z, KHOST DE, PATEL N, HARTMANN CB, MANICKAM S, SASIRAT S, NIKOLOV LA, MATHEWS S, SACKTON TB, and DAVIS CC. 2021. Deeply altered genome architecture in the endoparasitic flowering plant Sapria himalayana Griff. (Rafflesiaceae). Current Biology 31: 1002–1011.
CHOI KS, and PARK S. 2021. Complete plastid and mitochondrial genomes of Aeginetia indica reveal intracellular gene transfer (IGT), horizontal gene transfer (HGT), and cytoplasmic male sterility (CMS). International Journal of Molecular Sciences 22(11): 6143.
CHRISTIN P-A, EDWARDS EJ, BESNARD G, BOXALL SF, GREGORY R, KELLOGG EA, HARTWELL J, and OSBORNE CP. 2012. Adaptive evolution of C4 photosynthesis through recurrent lateral gene transfer. Current Biology 22(5): 445–449.
COLE LW. 2016. The evolution of per-cell organelle number. Frontiers in Cell and Developmental Biology 4: 85. CUSIMANO N, and RENNER SS. 2019. Sequential horizontal gene transfers from different hosts in a wide-spread Eurasian parasitic plant, Cynomorium coccineum. American Journal of Botany 106(5): 679–689.
CUSIMANO N, and WICKE S. 2015. Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae. New Phytologist 210(2): 680-693.
DAVID-SCHWARTZ R, RUNO S, TOWNSLEY B, MACHUKA J, and SINHA N. 2008. Long-distance transport of mRNA via par-enchyma cells and phloem across the host-parasite junction in Cuscuta. New Phytologist 179(4): 1133–1141.
DAVIS CC, ANDERSON WR, and WURDACK KJ. 2005. Gene transfer from a parasitic flowering plant to a fern. Proceedings of the Royal Society B 272(1578): 2237–2242.
DAVIS CC, and WURDACK KJ. 2004. Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales. Science 305(5684): 676–678.
DAVIS CC, and XI Z. 2015. Horizontal gene transfer in parasitic plants. Current Opinion in Plant Biology 26: 14–19.
DUNNING LT, OLOFSSON JK, PARISOD C, CHOUDHURY RR, MORENO- VILLENA JJ, YANG Y, DIONORA J, QUICK WP, PARK M, BENNETZEN JL, BESNARD G, NOSIL P, OSBORNE CP, and CHRISTIN P-A. 2019. Lateral transfers of large DNA fragments spread functional genes among grasses. Proceedings of the National Academy of Sciences of the U. S. A. 116(10): 4416–4425.
EMILIANI G, FONDI M, FANI R, and GRIBALDO S. 2009. A horizontal gene transfer at the origin of phenylpro-panoid metabolism: a key adaptation of plants to land. Biology Direct 4: 7.
FONTDEVILA A. 2011. The Dynamic Genome: A Darwinian Approach. OUP Oxford. FREEMAN VJ. 1951. Studies on the virulence of bacterioph-age-infected strains of Corynebacterium diphtheriae. Journal of Bacteriology 61(6): 675–688.
FUENTES I, STEGEMANN S, GOLCZYK H, KARCHER D, and BOCK R. 2014. Horizontal genome transfer as an asexual path to the formation of new species. Nature 511(7508): 232–235.
GANDINI CL, and SANCHEZ-PUERTA MV. 2017. Foreign plastid sequences in plant mitochondria are frequently ac-quired via mitochondrion-to-mitochondrion horizontal transfer. Scientific Reports 7: 43402.
GOGARTEN JP. 2003. Gene transfer: gene swapping craze reaches eukaryotes. Current Biology 13(2): R53–R54.
GOGARTEN JP, DOOLITTLE WF, and LAWRENCE JG. 2002. Prokaryotic evolution in light of gene transfer. Molecular Biology and Evolution 19(12): 2226–2238.
GRIFFITH F. 1928. The significance of pneumococcal types. The Journal of Hygiene 27(2): 113–159.
HAUPT S, OPARKA KJ, SAUER N, and NEUMANN S. 2001. Macromolecular trafficking between Nicotiana tabacum and the holoparasite Cuscuta reflexa. Journal of Experimental Botany 52(354): 173–177.
HIBDIGE SGS, RAIMONDEAU P, CHRISTIN P-A, and DUNNING LT. 2020. Phylogenetic relatedness, co-occurrence, and rhizomes increase lateral gene transfer among grasses. bioRxiv, 2020.02.17.952150.
HUANG J. 2013. Horizontal gene transfer in eukaryotes: the weak-link model. Bioessays 35(10): 868–875.
IORIZZO M, GRZEBELUS D, SENALIK D, SZKLARCZYK M, SPOONER D, and SIMON P. 2012a. Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements 2(6): 261–266.
IORIZZO M, SENALIK D, SZKLARCZYK M, GRZEBELUS D, SPOONER D, and SIMON P. 2012b. De novo assembly of the carrot mitochondrial genome using next generation sequen-cing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. BMC Plant Biology 12: 61.
JOEL DM. 2013. The haustorium and the life cycles of parasitic Orobanchaceae. In: Joel DM, Gressel J and Musselman LJ (eds), Parasitic Orobanchaceae: Para-sitic Mechanisms and Control Strategies, 21–23. Springer, Verlag, Berlin, Heidelberg.
KADO T, and INNAN H. 2018. Horizontal gene transfer in five parasite plant species in Orobanchaceae. Genome Biology and Evolution 10(12): 3196–3210.
KEELING PJ, and PALMER JD. 2008. Horizontal gene transfer in eukaryotic evolution. Nature Reviews Genetics 9(8): 605–618.
KIM G, and WESTWOOD JH. 2015. Macromolecule exchange in Cuscuta-host plant interactions. Current Opinion in Plant Biology 26: 20–25.
KLEINE T, MAIER UG, and LEISTER D. 2009. DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis. Annual Review of Plant Biology 60: 115–138.
KOONIN EV, MAKAROVA KS, and ARAVIND L. 2001. Horizontal gene transfer in prokaryotes: quantification and classi-fication. Annual Review of Microbiology 55: 709–742.
KOULINTCHENKO M, KONSTANTINOV Y, and DIETRICH A. 2003. Plant mitochondria actively import DNA via the permeability transition pore complex. The EMBO Journal 22(6): 1245–1254.
KWOLEK D, DENYSENKO-BENNETT M, GÓRALSKI G, CYGAN M, MIZIA P, PIWOWARCZYK R, SZKLARCZYK M, and JOACHIMIAK AJ. 2017. The first evidence of a host-to-parasite mitochondrial gene transfer in Orobanchaceae. Acta Biologica Cracoviensia Series Botanica 59(1): 13-22.
LAWRENCE JG, and ROTH JR. 1996. Selfish operons: Hor-izontal transfer may drive the evolution of gene clusters. Genetics 143(4): 1843–1860.
LI F-W, BROUWER P, CARRETERO-PAULET L, CHENG S, DE VRIES J, DELAUX P-M, EILY A, KOPPERS N, KUO L-Y, LI Z, SIMENC M, SMALL I, WAFULA E, ANGARITA S, BARKER MS, BRÄUTIGAM A, DEPAMPHILIS CW, GOULD S, HOSMANI PS, HUANG Y-M, HUETTEL B, KATO Y, LIU X, MAERE S, MCDOWELL R, MUELLER LA, NIEROP KGJ, RENSING SA, ROBISON T, ROTHFELS CJ, SIGEL EM, SONG Y, TIMILSENA PR, VAN DE PEER Y, WANG H, WILHELMSSON PKI, WOLF PG, XU X, DER JP, SCHLUEPMANN H, WONG GK-S, and PRYER KM. 2018. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants 4(7): 460–472.
LI F-W, VILLARREAL JC, KELLY S, ROTHFELS CJ, MELKONIAN M, FRANGEDAKIS E, RUHSAM M, SIGEL EM, DER JP, PITTERMANN J, BURGE DO, POKORNY L, LARSSON A, CHEN T, WESTSTRAND S, THOMAS P, CARPENTER E, ZHANG Y, TIAN Z, CHEN L, YAN Z, ZHU Y, SUN X, WANG J, STEVENSON DW, CRANDALL- STOTLER BJ, SHAW AJ, DEYHOLOS MK, SOLTIS DE, GRAHAM SW, WINDHAM MD, LANGDALE JA, WONG GK-S, MATHEWS S, and PRYER KM. 2014. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the U. S. A. 111(18): 6672–6677.
LYNCH M. 2007. The Origins of Genome Architecture. Sinauer Associates, Inc. Publishers, Sunderland, MA.
MA P-F, ZHANG Y-X, GUO Z-H, and LI D-Z. 2015. Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus. Scientific Reports 5: 11608.
MOWER JP, STEFANOVIĆ S, HAO W, GUMMOW JS, JAIN K, AHMED D, and PALMER JD. 2010. Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. BMC Biology 8: 150.
MOWER JP, STEFANOVIĆ S, YOUNG GJ, and PALMER JD. 2004. Plant genetics: gene transfer from parasitic to host plants. Nature 432(7014): 165–166.
NICKRENT DL. 2020. Parasitic angiosperms: How often and how many? Taxon 69 (1): 5-27.
NICKRENT DL, BLARER A, QIU Y-L, VIDAL-RUSSELL R, and ANDERSON FE. 2004. Phylogenetic inference in Raffle-siales: the influence of rate heterogeneity and horizontal gene transfer. BMC Evolutionary Biology 4: 40.
OCHMAN H, LAWRENCE JG, and GROISMAN EA. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405(6784): 299–304.
PARK J-M, MANEN J-F, and SCHNEEWEISS GM. 2007. Horizontal gene transfer of a plastid gene in the non-photosyn-thetic flowering plants Orobanche and Phelipanche (Orobanchaceae). Molecular Phylogenetics and Evolu-tion 43(3): 974–985.
PARK S, GREWE F, ZHU A, RUHLMAN TA, SABIR J, MOWER JP, and JANSEN RK. 2015. Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers. New Phytologist 208: 570–583.
PETERSEN G, ANDERSON B, BRAUN H-P, MEYER EH, and MØLLER IM. 2020. Mitochondria in parasitic plants. Mitochondrion 52: 173–182.
PETERSEN G, CUENCA A, MØLLER IM, and SEBERG O. 2015. Massive gene loss in mistletoe (Viscum, Viscaceae) mitochondria. Scientific Reports 5: 17588.
RICE DW, ALVERSON AJ, RICHARDSON AO, YOUNG GJ, SANCHEZ- PUERTA MV, MUNZINGER J, BARRY K, BOORE JL, ZHANG Y, DEPAMPHILIS CW, KNOX EB, and PALMER JD. 2013. Horizontal transfer of entire genomes via mitochon-drial fusion in the angiosperm Amborella. Science 342 (6165): 1468–1473.
RICE DW, and PALMER JD. 2006. An exceptional hori-zontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that hapto-phyte and cryptophyte plastids are sisters. BMC Biology 4: 31.
RICHARDS TA., SOANES MS, FOSTER PG, LEONARD G, THORNTON CR, and TALBOT NJ. 2009. Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. The Plant Cell 21(7): 1897–1911.
SAGAN L. 1967. On the origin of mitosing cells. Journal of Theoretical Biology 14(3): 255–74.
SANCHEZ-PUERTA MV. 2014. Involvement of plastid, mitochon-drial and nuclear genomes in plant-to-plant horizontal gene transfer. Acta Societatis Botanicorum Poloniae 83(4): 317–323.
SANCHEZ-PUERTA MV, CHO Y, MOWER JP, ALVERSON AJ, and PALMER JD. 2008. Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria. Molecular Biology and Evolution 25(8): 1762–1777.
SANCHEZ-PUERTA, M. VIRGINIA, ALEJANDRO EDERA, CAROLINA L. GANDINI, ANNA V. WILLIAMS, KATHARINE A. HOWELL, PAUL G. NEVILL, and IAN SMALL. 2019. Genome-scale transfer of mitochondrial DNA from legume hosts to the holopar-asite Lophophytum mirabile (Balanophoraceae). Mo-lecular Phylogenetics and Evolution 132 (March): 243–50.
SCHNEIDER AC, CHUN H, STEFANOVIĆ S, and BALDWIN BG. 2018. Punctuated plastome reduction and host-parasite horizontal gene transfer in the holoparasitic plant genus Aphyllon. Proceedings of the Royal Society B 285(1887): 20181535.
SHAHID S, KIM G, JOHNSON NR, WAFULA E, WANG F, CORUH C, BERNAL-GALEANO V, PHIFER T, DEPAMPHILIS CW, WESTWOOD JH, and AXTELL MJ. 2018. MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs. Nature 553(7686): 82–85.
SHTRATNIKOVA VY, SCHELKUNOV MI, PENIN AA, and LOGACHEVA MD. 2020. Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant Hypopitys monotropa, its structure, gene expression and RNA editing. PeerJ 8: e9309.
SINN BT, and BARRETT CF. 2020. Ancient mitochondrial gene transfer between fungi and the orchids. Molecular Biology and Evolution 37(1): 44–57.
SKIPPINGTON E, BARKMAN TJ, RICE DW, and PALMER JD. 2015. Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes. Proceedings of the National Academy of Sciences of the U. S. A. 112(27): E3515–E3524.
SKIPPINGTON E, BARKMAN TJ, RICE DW, and PALMER JD. 2017. Comparative mitogenomics indicates respiratory com-petence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals hori-zontal gene transfer and remarkable variation in genome size. BMC Plant Biology 17(1): 49.
SKIPPINGTON E, and RAGAN MA. 2012. Phylogeny rather than ecology or lifestyle biases the construction of Escher-ichia coli-Shigella genetic exchange communities. Open Biology 2(9): 120112.
SOUCY SM, HUANG J, and GOGARTEN JP. 2015. Horizontal gene transfer: building the web of life. Nature Reviews Genetics 16(8): 472–482.
STEGEMANN S, and BOCK R. 2009. Exchange of genetic material between cells in plant tissue grafts. Science 324(5927): 649–651.
STEGEMANN S, KEUTHE M, GREINER S, and BOCK R. 2012. Horizontal transfer of chloroplast genomes between plant species. Proceedings of the National Academy of Sciences of the U. S. A. 109(7): 2434–2438.
STRAUB SCK, CRONN RC, EDWARDS C, FISHBEIN M, and LISTON A. 2013. Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (Apocynaceae). Genome Biology and Evolution 5(10): 1872–1885.
VAUGHN JC, MASON MT, SPER-WHITIS GL, KUHLMAN P, and PALMER JD. 1995. Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia. Journal of Molecular Evolu-tion 41(5): 563–572.
VOGEL A, SCHWACKE R, DENTON AK, USADEL B, HOLLMANN J, FISCHER K, BOLGER A, SCHMIDT MHW, BOLGER ME, GUNDLACH H, MAYER KFX, WEISS-SCHNEEWEISS H, TEMSCH EM, and KRAUSE K. 2018. Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris. Nature Communications 9: 2515.
WANG M, WEIBERG A, LIN F-M, THOMMA BPHJ, HUANG H-D, and JIN H. 2016. Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection. Nature Plants 2: 16151.
WEIBERG A, and JIN H. 2015. Small RNAs - the secret agents in the plant-pathogen interactions. Current Opinion in Plant Biology 26: 87–94.
WEIBERG A, WANG M, BELLINGER M, and JIN H. 2014. Small RNAs: a new paradigm in plant-microbe interactions. Annual Review of Phytopathology 52: 495–516.
WEIBERG A, WANG M, LIN F-M, ZHAO H, ZHANG Z, KALOSHIAN I, HUANG H-D, and JIN H. 2013. Fungal small RNAs suppress plant immunity by hijacking host RNA interference pathways. Science 342(6154): 118–123.
WESTWOOD JH, RONEY JK, KHATIBI PA, and STROMBERG VK. 2009. RNA translocation between parasitic plants and their hosts. Pest Management Science 65(5): 533–539.
WESTWOOD JH, YODER JI, TIMKO MP, and DEPAMPHILIS CW. 2010. The evolution of parasitism in plants. Trends in Plant Science 15(4): 227–235.
WICKELL DA, and LI F-W. 2020. On the evolutionary significance of horizontal gene transfers in plants. New Phytologist 225(1): 113–117.
WICKE S. 2013. Genomic evolution in Orobanchaceae. In: Joel DM, Gressel J and Musselman LJ (eds), Parasitic Orobanchaceae: Parasitic Mechanisms and Control Strategies, 267–286. Springer, Verlag, Berlin, Heidelberg.
WICKE S, MÜLLER KF, DEPAMPHILIS CW, QUANDT D, WICKETT NJ, ZHANG Y, RENNER SS, and SCHNEEWEISS GM. 2013. Mechanisms of functional and physical genome reduc-tion in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. The Plant Cell 25(10): 3711–3725.
WIJAYAWARDENA BK, MINCHELLA DJ, and DEWOODY JA. 2013. Hosts, parasites, and horizontal gene transfer. Trends in Parasitology 29(7): 329–338.
WOLF JB. 2009. Cyto-nuclear interactions can favor the evolution of genomic imprinting. Evolution 63(5): 1364–1371.
WOODSON JD, and CHORY J. 2008. Coordination of gene expression between organellar and nuclear genomes. Nature Reviews Genetics 9(5): 383–395.
XI Z, BRADLEY RK, WURDACK KJ, WONG K, SUGUMARAN M, BOMBLIES K, REST JS, and DAVIS CC. 2012. Horizontal transfer of expressed genes in a parasitic flowering plant. BMC Genomics 13: 227.
YANG Z, WAFULA EK, KIM G, SHAHID S, MCNEAL JR, RALPH PE, TIMILSENA PR, YU W-B, KELLY EA, ZHANG H, PERSON TN, ALTMAN NS, AXTELL MJ, WESTWOOD JH, and DEPAMPHILIS CW. 2019. Convergent horizontal gene transfer and cross-talk of mobile nucleic acids in parasitic plants. Nature Plants 5(9): 991–1001.
YANG Z, ZHANG Y, WAFULA EK, HONAAS LA, RALPH PE, JONES S, CLARKE CR, LIU S, SU C, ZHANG H, ALTMAN NS, SCHUSTER SC, TIMKO MP, YODER JI, WESTWOOD JH, and DEPAMPHILIS CW. 2016. Horizontal gene transfer is more frequent with increased heterotrophy and contributes to para-site adaptation. Proceedings of the National Academy of Sciences of the U. S. A. 113(45): E7010–E7019.
YOSHIDA S, MARUYAMA S, NOZAKI H, and SHIRASU K. 2010. Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 328(5982): 1128.
ZERVAS A, PETERSEN G, and SEBERG O. 2019. Mitochondrial genome evolution in parasitic plants. BMC Evolution-ary Biology 19(1): 87.
ZHANG D, QI J, YUE J, HUANG J, SUN T, LI S, WEN J-F, HETTENHAUSEN C, WU J, WANG L, ZHUANG H, WU J, and SUN G. 2014. Root parasitic plant Orobanche aegyp-tiaca and shoot parasitic plant Cuscuta australis obtained Brassicaceae-specific strictosidine synthase- like genes by horizontal gene transfer. BMC Plant Biology 14: 19.
ZHANG Y, FERNANDEZ-APARICIO M, WAFULA EK, DAS M, JIAO Y, WICKETT NJ, HONAAS LA, RALPH PE, WOJCIECHOWSKI MF, TIMKO MP, YODER JI, WESTWOOD JH, and DEPAMPHILIS CW. 2013. Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species. BMC Evolutionary Biology 13: 48.
ZHAO N, GROVER CE, CHEN Z, WENDEL JF, and HUA J. 2019. Intergenomic gene transfer in diploid and allopolyploid Gossypium. BMC Plant Biology 19(1): 492.
Przejdź do artykułu